CF835430

Overview
NameCF835430
Unique NameCF835430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 8.172e-67
Identity = 122/149 (81.88%), Postives = 136/149 (91.28%), Query Frame = -2
Query:  172 DYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 618
            D RL++AK LGAD+I++VSTN+QD+ EEV KIQ  M TG+DVSFDC GFNKTMSTAL+ATRAGGKVCLVG+   EMTVPLTPAAAREVD+VG+FRY+NTWPLCLEFLRSGKIDVKPLITHRF FSQK+VEEAFETSARGG AIKVMFNL
Sbjct:  218 DQRLAIAKDLGADDIIRVSTNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSARGGNAIKVMFNL 366          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 65/145 (44.83%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  181 RLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 612
            RLS AK++GAD I+++S    Q+IA++VE +   +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFETS + G  +KVM
Sbjct:  208 RLSKAKEVGADFILQISNESPQEIAKKVEGL---LGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL--EKALEAFETSKK-GLGLKVM 346          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 62/144 (43.06%), Postives = 93/144 (64.58%), Query Frame = -2
Query:  181 RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 612
            RLS AK++GAD I+++S    +  E  +K++  +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFETS + G  +KVM
Sbjct:  206 RLSKAKEVGADFILEISNESPE--EIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL--EKALEAFETSKK-GLGLKVM 344          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 64/145 (44.14%), Postives = 94/145 (64.83%), Query Frame = -2
Query:  181 RLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 612
            RLS AK++GAD ++++S    Q+IA +VE +   +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFET  + G  +K+M
Sbjct:  209 RLSKAKEIGADLVLQISKESPQEIARKVEGL---LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 63/145 (43.45%), Postives = 95/145 (65.52%), Query Frame = -2
Query:  181 RLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 612
            RL+ AK++GAD  ++V+     DIA++VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFET A+ G  +KVM
Sbjct:  209 RLAKAKEVGADFTIQVAKETPHDIAKKVESV---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVVVGMGPEMINLPLVHAAVREVDIKGVFRYCNTWPMAVSMLASKTLNVKPLVTHRFPL--EKAVEAFET-AKKGLGLKVM 347          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 63/145 (43.45%), Postives = 94/145 (64.83%), Query Frame = -2
Query:  181 RLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 612
            RL+ AK++GAD  ++V     Q+IA +VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFET A+ G  +KVM
Sbjct:  209 RLTKAKEVGADFTIQVGKETPQEIASKVESL---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVIVGMGAEMVNLPLVHAAIREVDIKGVFRYCNTWPMAISMLASKTLNVKPLVTHRFPL--EKAVEAFET-AKKGVGLKVM 347          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 62/145 (42.76%), Postives = 94/145 (64.83%), Query Frame = -2
Query:  181 RLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 612
            RLS AK++GAD ++++S    Q+IA +VE +   +G   +V+ +C G   ++   + ATR+GG + LVG+G    T+PL  AA REVD+ GVFRY NTWP+ +  L S  +++KPL+THRF    ++  EAFET  + G  +K+M
Sbjct:  209 RLSKAKEIGADLVLQISKESPQEIAGKVEGL---LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTIPLLHAAVREVDIKGVFRYCNTWPVAISMLASKSVNIKPLVTHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 63/145 (43.45%), Postives = 93/145 (64.14%), Query Frame = -2
Query:  181 RLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 612
            RLS AK++GAD ++++S    Q+IA +VE +   +G   +V+ +C G   ++   + AT +GG + LVG+G    T+PL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPLITHRF    ++  EAFET  + G  +K+M
Sbjct:  209 RLSKAKEIGADLVLQISKESPQEIARKVEGL---LGCKPEVTIECTGAGASIQAGIYATHSGGTLVLVGLGSEMTTIPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLITHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO_BOMMO (Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 58/147 (39.46%), Postives = 83/147 (56.46%), Query Frame = -2
Query:  172 RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 612
            RL  A +LGADN++ V     D  E VEKI K +G   DVS D  G+      AL  T+  G V +VG+  + + +PL+ A  REVDVVG FR  NT+   L  + SG I +   ITHRF  +  + +EA +  A+ G A+K++ ++
Sbjct:  204 RLDAALELGADNVLLVRREYTD-EEVVEKIVKLLGDRPDVSIDACGYGSAQRVALLVTKTAGLVLVVGIADKTVELPLSQALLREVDVVGSFRIMNTYQPALAAVSSGAIPLDKFITHRFPLN--KTKEALDL-AKSGAAMKILIHV 346          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 47/127 (37.01%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  235 RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM-GHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 612
            RL  AKK+GA +I+ +    QD  EE++ I      G+DV+++ AG    + +AL++ R GGK+ +VG+    E+ + +   A  E+D+ G+FRY NT+P  +EFL SG +D K L+T ++   Q +
Sbjct:  209 RLEAAKKMGATHIINIRE--QDALEEIKTITN--DRGVDVAWETAGNPAALQSALASVRRGGKLAIVGLPSQNEIPLNVPFIADNEIDIYGIFRYANTYPKGIEFLASGIVDTKHLVTDQYSLEQTQ 331          
The following BLAST results are available for this feature:
BLAST of CF835430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
IDND_VITVI8.172e-6781.88L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_BOVIN6.999e-2644.83Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_SHEEP1.194e-2543.06Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_HUMAN3.473e-2544.14Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_RAT4.536e-2543.45Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_MOUSE4.536e-2543.45Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_MACFA7.738e-2542.76Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_PONAB1.320e-2443.45Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_BOMMO2.181e-1939.46Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 ... [more]
DHSO_BACSU4.547e-1737.01Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835430 ID=CF835430; Name=CF835430; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTATACCCTTTAAGGACAATTCCATTTTATTTCATCTTTTGCCC
AAACGTTTACATGTACGTTGTATTTTACAGATTAAACATGACCTTGAGTG
CAGTTCGTTGTATTTGACAGATTAAACATGACCTTGATTGCAGTACATTG
TATTTTACAGATTAAACATTACAGATTAAACATGACCTTGATTGCAGTAC
CACCACGAGCACTTGTTTCAAAGGCCTCTTCCACTTCTTTCTGGGAGAAA
CCAAACCTATGCGTGATAAGGGGCTTTACATCAATCTTTCCGCTTCTAAG
GAACTCCAGACACAGTGGCCAGGTGTTCTTGTAGCGAAACACCCCCACCA
CATCCACCTCCCTTGCAGCAGCTGGGGTGAGTGGGACAGTCATTTCACGA
TGACCCATCCCCACGAGGCAAACTTTACCACCTGCACGAGTAGCACTCAG
TGCTGTTGACATGGTTTTGTTAAAGCCTGCACAATCAAAGCTCACATCTA
TTCCTGTCCCCATGGCTTTCTGTATCTTTTCCACTTCTTCAGCTATGTCC
TGCAAATTTGTTGAAACTTTAACAATATTATCTGCACCAAGTTTCTTTGC
AACAGATAAACGATAGTCAGTTTGGCAACCTCAATCATTCATATATTGAT
CTAGCAATGGATGCTAAAAAACTAATGCTAGCAATCTTTCTCCT
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