CF835434

Overview
NameCF835434
Unique NameCF835434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8915 contig Csv1_Contig8915:96..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.795e-41
Identity = 81/99 (81.82%), Postives = 88/99 (88.89%), Query Frame = -2
Query:  217 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 513
            MEFT  QL QYNGTD SKPIYVAIKGRVFDVTTGKSFYG GG Y+MFAGKDASRAL KMSKN++DV+PSL+GL EKE+  L+DWE KFEAKYPVVGRVV
Sbjct:    1 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 99          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = -2
Query:  220 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRV 510
            E T  +L QY+G+DP KP+ +AIK +++DVT  + FYGPGG YA+FAGKDASRALAKMS  + D+T  + GL   E+  L DWE KF +KY  VG V
Sbjct:   74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTV 170          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = -2
Query:  220 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRV 510
            E T  +L  Y+G+D  KP+ +AIKG+++DV+  + FYGPGG YA+FAGKDASRALAKMS  D D+T  + GL   E+  L DWE KF +KY  VG +
Sbjct:   70 EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTI 166          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  226 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSD-WEKKFEAKYPVVG 507
            FT  +L +Y+G +  +PIY+A+KG VFDVT+GK FYG G  Y   AGKD+SR +AKMS +  D+T  + GL  KE+  L D + K ++AKYP+VG
Sbjct:   46 FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVG 140          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.300e-20
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = -2
Query:  226 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSD-WEKKFEAKYPVVG 507
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FYG G  Y   AGKD+SR +AKMS +  D+T    GL  KE+  L D + K ++AKYP+VG
Sbjct:   46 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVG 140          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.552e-18
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = -2
Query:  226 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSD-WEKKFEAKYPVVG 507
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FYG G  Y    GKD++R +AKMS +  D+T    GL  KE+  L + + K ++AKYP+VG
Sbjct:   47 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVG 141          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = -2
Query:  226 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSD-WEKKFEAKYPVVG 507
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FYG G  Y    GKD++R +AKMS +  D+T    GL  +E+  L D + + ++AKYP+VG
Sbjct:   44 FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVG 138          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDG--------LPEKEMGVLSDWEKKFEAKYPVVGRVV 510
            ++TPA+L +YNG+  S  +++AIKG V++VT G  FYGP G Y+ FAG DASR LAK S  DD+  P  D         L ++E   L+DW+  F+ KY  VGR++
Sbjct:   42 DYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNS-FDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLI 145          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: DAP1_YEAST (Damage response protein 1 OS=Saccharomyces cerevisiae GN=DAP1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 46/118 (38.98%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  217 SNQTRRSSFVHSSMEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS------KNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 552
            +N + + S    +  F P  L ++NG D  K I++AI+G+V+D T G+ FYGP G Y  FAG DASR LA  S      K+ D     LD L ++++  L +W++ FE KYP +G ++
Sbjct:   29 TNDSNKGSEPVVAGNFFPRTLSKFNGHDDEK-IFIAIRGKVYDCTRGRQFYGPSGPYTNFAGHDASRGLALNSFDLDVIKDWDQPIDPLDDLTKEQIDALDEWQEHFENKYPCIGTLI 145          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 510
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  L   +   LSDWE +F  KY  VG+++
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLL 171          
The following BLAST results are available for this feature:
BLAST of CF835434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SBP3_ARATH3.795e-4181.82Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
MSBP1_ARATH1.449e-2455.67Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
MSBP2_ARATH7.191e-2453.61Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
NENF_RAT1.658e-2050.53Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE6.300e-2050.53Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
NENF_HUMAN1.552e-1847.37Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
NENF_BOVIN5.896e-1846.32Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
DAP1_SCHPO2.926e-1745.28Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]
DAP1_YEAST4.991e-1738.98Damage response protein 1 OS=Saccharomyces cerevis... [more]
PGRC1_PONAB9.413e-1643.56Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835434 ID=CF835434; Name=CF835434; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTCACACAACTCGCATTCACTTATTAACCATTTCA
TCTCCCTTACAAACTTTTTAATCATACCCACCTCCTCACTCAATACCCAC
ATAAAGATAAGAGCTTTCAGTAGATCACCTTACAAATAAACACAAAAAAA
TAGACATATAAACGCAAAATGCATAATCATAACAAGTAAATTCATAAAAA
GATAAAAAATTTATTAAACAACACGACCCACAACTGGGTACTTAGCTTCG
AATTTCTTCTCCCAGTCACTAAGAACGCCCATCTCTTTCTCTGGGAGGCC
ATCGAGGGAGGGAGTGACATCGTCATCATTCTTGCTCATCTTAGCCAAAG
CTCTGCTGGCATCTTTGCCTGCGAACATCGCGTACGCGCCACCTGGGCCG
TAAAAGGACTTGCCTGTTGTCACGTCGAACACGCGGCCTTTGATTGCCAC
GTATATTGGTTTTGATGGGTCTGTTCCGTTGTATTGGATCAGCTGAGCCG
GGGTGAATTCCATTGACGAATGAACGAACGATGATCGTCTGGTTTGGTTG
GAAGCG
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