CF835435

Overview
NameCF835435
Unique NameCF835435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8915 contig Csv1_Contig8915:95..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.443e-42
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 3
Query:   45 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 341
            MEFT  QL QYNGTD SKPIYVAIKGRVFDVTTGKSFYG GG Y+MFAGKDASRAL KMSKN++DV+PSL+GLTEKE+  L+DWE KFEAKYPVVGRVV
Sbjct:    1 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 99          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.410e-24
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   48 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 338
            E T  +L QY+G+DP KP+ +AIK +++DVT  + FYGPGG YA+FAGKDASRALAKMS  + D+T  + GL   E+  L DWE KF +KY  VG V
Sbjct:   74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTV 170          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.999e-24
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 3
Query:   48 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 338
            E T  +L  Y+G+D  KP+ +AIKG+++DV+  + FYGPGG YA+FAGKDASRALAKMS  D D+T  + GL   E+  L DWE KF +KY  VG +
Sbjct:   70 EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTI 166          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.251e-21
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   51 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSD-WEKKFEAKYPVVG 332
            FT  +L +Y+G +  +PIY+A+KG VFDVT+GK FYG G  Y   AGKD+SR +AKMS +  D+T  + GLT KE+  L D + K ++AKYP+VG
Sbjct:   46 FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVG 140          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.235e-20
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 3
Query:   51 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSD-WEKKFEAKYPVVG 332
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FYG G  Y   AGKD+SR +AKMS +  D+T    GLT KE+  L D + K ++AKYP+VG
Sbjct:   46 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVG 140          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 3
Query:   51 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSD-WEKKFEAKYPVVG 332
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FYG G  Y    GKD++R +AKMS +  D+T    GLT KE+  L + + K ++AKYP+VG
Sbjct:   47 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVG 141          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.156e-18
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 3
Query:   51 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSD-WEKKFEAKYPVVG 332
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FYG G  Y    GKD++R +AKMS +  D+T    GLT +E+  L D + + ++AKYP+VG
Sbjct:   44 FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVG 138          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: DAP1_YEAST (Damage response protein 1 OS=Saccharomyces cerevisiae GN=DAP1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 3
Query:    6 TNHIRRSSFVHSSMEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS------KNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 341
            TN   + S    +  F P  L ++NG D  K I++AI+G+V+D T G+ FYGP G Y  FAG DASR LA  S      K+ D     LD LT++++  L +W++ FE KYP +G ++
Sbjct:   29 TNDSNKGSEPVVAGNFFPRTLSKFNGHDDEK-IFIAIRGKVYDCTRGRQFYGPSGPYTNFAGHDASRGLALNSFDLDVIKDWDQPIDPLDDLTKEQIDALDEWQEHFENKYPCIGTLI 145          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 3
Query:   48 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDG--------LTEKEMGVLSDWEKKFEAKYPVVGRVV 341
            ++TPA+L +YNG+  S  +++AIKG V++VT G  FYGP G Y+ FAG DASR LAK S  DD+  P  D         L ++E   L+DW+  F+ KY  VGR++
Sbjct:   42 DYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNS-FDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLI 145          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 3
Query:   48 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 341
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  LT  +   LSDWE +F  KY  VG+++
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLL 171          
The following BLAST results are available for this feature:
BLAST of CF835435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SBP3_ARATH7.443e-4282.83Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
MSBP1_ARATH1.410e-2455.67Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
MSBP2_ARATH6.999e-2453.61Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
NENF_RAT3.251e-2151.58Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE1.235e-2051.58Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
NENF_HUMAN3.043e-1948.42Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
NENF_BOVIN1.156e-1847.37Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
DAP1_YEAST9.789e-1840.68Damage response protein 1 OS=Saccharomyces cerevis... [more]
DAP1_SCHPO1.670e-1745.28Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]
PGRC1_PONAB1.846e-1644.55Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835435 ID=CF835435; Name=CF835435; organism=Citrus sinensis; type=EST; length=552bp
CCGCTACCAACCACATCAGACGATCATCGTTCGTTCATTCGTCAATGGAA
TTCACACCGGCTCAGCTGATCCAATACAACGGAACAGACCCATCAAAACC
AATATACGTGGCAATCAAAGGCCGCGTGTTCGACGTGACAACAGGCAAGT
CCTTTTACGGCCCAGGTGGCGCGTACGCGATGTTCGCAGGCAAAGATGCC
AGCAGAGCTTTGGCTAAGATGAGCAAGAATGATGACGATGTCACTCCCTC
CCTCGATGGCCTCACAGAGAAAGAGATGGGCGTTCTTAGTGACTGGGAGA
AGAAATTCGAAGCTAAGTACCCAGTTGTGGGTCGTGTTGTTTAATAAATT
TTTTATCTTTTTATGAATTTACTTGTTATGATTATGCATTTTGCGTTTAT
ATGTCTATTTTTTTGTGTTTATTTGTAAGGTGATCTACTGAAAGCTCTTA
TCTTTATGTGGGTATTGAGTGAGGAGTGTGTATGATTAAAAGTTTGTAAG
GGAATGAATGGTTAATAAATGAATGCGAGTTGTGTGAAAAAAAAAAAAAA
AA
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