CF835443

Overview
NameCF835443
Unique NameCF835443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835443 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   79 GGLNAYVTGSPDSKLAVLLISDVYGYEAPNLRKLADNVAAAGFYVAVPDFFHGD 240
            GGL AYV+G+  S  AV+L SDV+GYEAP LR++ D VA AG++V VPDF  GD
Sbjct:   55 GGLRAYVSGAASSSRAVVLASDVFGYEAPLLRQIVDKVAKAGYFVVVPDFLKGD 108
The following BLAST results are available for this feature:
BLAST of CF835443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
E134_MAIZE1.359e-1261.11Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01D21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835443 ID=CF835443; Name=CF835443; organism=Citrus sinensis; type=EST; length=278bp
AAAATGTCAGGTCCTCTACGCTGAGCAAATCCACCGACATTGAATCCAAA
CAGTGGAGCAGGTCATGTTGAGAAACTTGGTGGACTCAACGCTTATGTCA
CTGGCTCTCCTGATTCCAAGCTTGCCGTTCTTCTCATTTCCGACGTTTAT
GGATATGAAGCTCCAAACTTGAGGAAGCTTGCAGACAATGTTGCAGCAGC
TGGATTCTACGTGGCAGTTCCTGACTTCTTTCATGGGGATCCATATGTAG
CTGATGGTGGGAAACCTCTACGAGAATG
back to top