CF835460

Overview
NameCF835460
Unique NameCF835460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835460_ssr524 microsatellite CF835460_ssr524:524..539. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7909 contig Csv1_Contig7909:286..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.472e-24
Identity = 67/128 (52.34%), Postives = 76/128 (59.38%), Query Frame = -2
Query:   90 TPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEVK 473
            TPNVA+N N+ S++ MLFF  KN  S + RLVVRA+                                    V+ILR+ESYWY G GSVVA DQDP +R PVVV  NKVNYANVSTNNYALDEIEEVK
Sbjct:   17 TPNVASNTNT-SRTTMLFFSSKNYGSTAPRLVVRAAEEAAPPAAAATAEPAEAPVKAAKPPPIGPKRGTK--VRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141          
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.250e-23
Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = -2
Query:   90 TPNVATNVNSGSKSNMLFFPP-KNNSSNSF-RLVVRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEVK 473
            TPN+AT+ N+  +++MLFF   KNN++ +F RLVVRA+                                    V++LR+ESYWY G+GSVVAVDQDP +R PVVV  NKVNYANVSTNNYALDE+EEVK
Sbjct:   17 TPNIATS-NTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAPPAKAAKPPPIGPKRGTK--VRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143          
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.509e-19
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = -2
Query:   93 VKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEV 257
            V+I+R+ESYWY G+GSVVAVDQDPK+R PVVV  NKVNYANVSTNNYALDEI+EV
Sbjct:   70 VRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124          
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.363e-19
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = -2
Query:   90 VKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEVK 257
            VKILR+ESYWY  +GSVVAVDQDPK+R PVVV   KVNYAN+STNNYALDE+EEVK
Sbjct:   90 VKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145          
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.669e-18
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -2
Query:   93 VKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEV 257
            VKILRRESYW+  +GSVVAVDQDPK+R PVVV   KVNYAN+STNNYALDE+EEV
Sbjct:   87 VKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141          
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAE_HORVU (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.342e-18
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = -2
Query:   93 VKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEV 257
            VKILRRESYWYNG GSVV VDQDP +R PVVV   KVNYA VSTNNYALDEI+EV
Sbjct:   91 VKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIKEV 145          
The following BLAST results are available for this feature:
BLAST of CF835460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAEA_NICSY3.472e-2452.34Photosystem I reaction center subunit IV A, chloro... [more]
PSAEB_NICSY2.250e-2350.00Photosystem I reaction center subunit IV B, chloro... [more]
PSAE_SPIOL1.509e-1981.82Photosystem I reaction center subunit IV, chloropl... [more]
PSAE2_ARATH3.363e-1980.36Photosystem I reaction center subunit IV B, chloro... [more]
PSAE1_ARATH1.669e-1880.00Photosystem I reaction center subunit IV A, chloro... [more]
PSAE_HORVU6.342e-1881.82Photosystem I reaction center subunit IV, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01E08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835460 ID=CF835460; Name=CF835460; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTGAATAACATTCCTGGGAACAAAGGCTCCCTTTA
GAGCGGGGAATAATATGNAAATNAAAATTANATCCCTTATTTAACTTCTT
CGATCTCATCCAATGCATAGTTGTTCGTCGATACATTTGCATAGTTAACC
TTGTTCCCTCAAACCACAACTGGGTTTCGACTCTTGGGATCCTGGTCAAC
AGCAACCACAGATCCAATGCCATTGTACCAGTAGGACTCCCTCCTGAGAA
TCTTAACCTTGGCGCCTCTCTTGGGTCCAATCGGAGGTGGCTTGGGCTTG
GGAGCTGCTTCACCTTCAGCTGGGGCAGCGGTGGTGGCAGCAGCCGGCGG
GGCAGCAGCCTCCTCAGAAGCCCTTACAACAAGCCTGAAACTGTTGGAGC
TGTTGTTCTTTGGAGGGAAAAACAGCATGTTGCTCTTGGAACCTGAGTTT
ACATTGGTGGCAACATTGGGTGTCAGCGAAAACCCAGAAGCAGCTGATGC
CATGTTGCAGCTAGCCATTGCTTTTTCTTTCTTTCTTTCGCTGTTTCTGT
TTAACTGGGGAGAGAGTTGCAGAAAATCC
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