CF835460
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.472e-24 Identity = 67/128 (52.34%), Postives = 76/128 (59.38%), Query Frame = -2 Query: 90 TPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEVK 473 TPNVA+N N+ S++ MLFF KN S + RLVVRA+ V+ILR+ESYWY G GSVVA DQDP +R PVVV NKVNYANVSTNNYALDEIEEVK Sbjct: 17 TPNVASNTNT-SRTTMLFFSSKNYGSTAPRLVVRAAEEAAPPAAAATAEPAEAPVKAAKPPPIGPKRGTK--VRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.250e-23 Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = -2 Query: 90 TPNVATNVNSGSKSNMLFFPP-KNNSSNSF-RLVVRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEVK 473 TPN+AT+ N+ +++MLFF KNN++ +F RLVVRA+ V++LR+ESYWY G+GSVVAVDQDP +R PVVV NKVNYANVSTNNYALDE+EEVK Sbjct: 17 TPNIATS-NTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAPPAKAAKPPPIGPKRGTK--VRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.509e-19 Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = -2 Query: 93 VKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEV 257 V+I+R+ESYWY G+GSVVAVDQDPK+R PVVV NKVNYANVSTNNYALDEI+EV Sbjct: 70 VRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.363e-19 Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = -2 Query: 90 VKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEVK 257 VKILR+ESYWY +GSVVAVDQDPK+R PVVV KVNYAN+STNNYALDE+EEVK Sbjct: 90 VKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.669e-18 Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -2 Query: 93 VKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEV 257 VKILRRESYW+ +GSVVAVDQDPK+R PVVV KVNYAN+STNNYALDE+EEV Sbjct: 87 VKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141
BLAST of CF835460 vs. ExPASy Swiss-Prot
Match: PSAE_HORVU (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 6.342e-18 Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = -2 Query: 93 VKILRRESYWYNGIGSVVAVDQDPKSRNPVVV*GNKVNYANVSTNNYALDEIEEV 257 VKILRRESYWYNG GSVV VDQDP +R PVVV KVNYA VSTNNYALDEI+EV Sbjct: 91 VKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIKEV 145 The following BLAST results are available for this feature:
BLAST of CF835460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835460 ID=CF835460; Name=CF835460; organism=Citrus sinensis; type=EST; length=579bpback to top |