CF835464 | Citrus Genome Database

Overview


Name	CF835464
Unique Name	CF835464
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	505

Libraries


Library Name	Type
Washington Navel Orange Shoot Meristem cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1188	contig	Csv1_Contig1188:620..1124.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 2.420e-46
Identity = 81/128 (63.28%), Postives = 99/128 (77.34%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  202 NYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.196e-46
Identity = 80/128 (62.50%), Postives = 99/128 (77.34%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  197 NYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.201e-45
Identity = 79/128 (61.72%), Postives = 98/128 (76.56%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  195 NYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.049e-45
Identity = 79/128 (61.72%), Postives = 98/128 (76.56%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  191 NYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.495e-45
Identity = 77/128 (60.16%), Postives = 98/128 (76.56%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY  CG A+GVDLLNNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  189 NYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.564e-45
Identity = 78/128 (60.94%), Postives = 98/128 (76.56%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  191 NYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.017e-44
Identity = 81/128 (63.28%), Postives = 99/128 (77.34%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY +CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  AGRLPGYG  TNIINGG+ECG   +  V++RIGF+  +C  FGI  GDNLDC +QRP+G +L   S+
Sbjct:  189 NYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.864e-44
Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY  CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG   ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  201 NYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.607e-44
Identity = 80/128 (62.50%), Postives = 93/128 (72.66%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY +CG A+GVDLLNNPDLLATDP +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQR Y       SM
Sbjct:  194 NYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321

[Close]

BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.124e-43
Identity = 78/128 (60.94%), Postives = 95/128 (74.22%), Query Frame = -1

Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  197 NYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324

The following BLAST results are available for this feature:

BLAST of CF835464 vs. ExPASy Swiss-Prot

BLAST of CF835464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55


Match Name	E-value	Identity	Description
CHI1_TOBAC	2.420e-46	63.28	Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1...	[more]
CHI2_TOBAC	9.196e-46	62.50	Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1...	[more]
CHIC_SOLLC	1.201e-45	61.72	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	[more]
CHI1_SOLTU	2.049e-45	61.72	Endochitinase 1 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI2_SOLTU	3.495e-45	60.16	Endochitinase 2 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI3_SOLTU	4.564e-45	60.94	Endochitinase 3 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI2_PEA	1.017e-44	63.28	Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=...	[more]
CHIT_SOLTU	3.864e-44	60.94	Endochitinase OS=Solanum tuberosum PE=2 SV=1	[more]
CHI1_THECC	8.607e-44	62.50	Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S...	[more]
CHI1_GOSHI	1.124e-43	60.94	Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS03_01E10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF835464 ID=CF835464; Name=CF835464; organism=Citrus sinensis; type=EST; length=505bp
ATTTANTTANAATAAGAGGGTAACCCTTTAAATGTCCACCTACAAGTGTG
ACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAA
CGTTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAG
GCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTTG
CCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCCC
AACGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGT
ATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCG
TCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCA
GAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTGGCAAGTAGGT
CTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTAA
TTGCA