CF835465

Overview
NameCF835465
Unique NameCF835465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:642..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.999e-40
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP L+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  210 IGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.140e-39
Identity = 71/120 (59.17%), Postives = 90/120 (75.00%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP L+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  205 IGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.488e-39
Identity = 70/120 (58.33%), Postives = 89/120 (74.17%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP L+ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  203 IGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.539e-39
Identity = 70/120 (58.33%), Postives = 89/120 (74.17%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP L+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  199 IGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.330e-39
Identity = 68/120 (56.67%), Postives = 89/120 (74.17%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP L+ATD ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  197 IGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.655e-39
Identity = 69/120 (57.50%), Postives = 89/120 (74.17%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP L+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  199 IGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.260e-38
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 356
            +G DL  NP L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG+  +D V NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  216 IGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.807e-38
Identity = 72/120 (60.00%), Postives = 89/120 (74.17%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP L+ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  AGRLPGYG  TNIINGG+ECG   +  V++RIGF+  +C  FGI  GDNLDC +QRP+G +L   S+
Sbjct:  197 IGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.788e-38
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP L+ATDPV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG   ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  209 IGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.067e-37
Identity = 68/120 (56.67%), Postives = 89/120 (74.17%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G +L  NP L+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG+  +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  215 IGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
The following BLAST results are available for this feature:
BLAST of CF835465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHI1_TOBAC2.999e-4060.00Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_TOBAC1.140e-3959.17Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIC_SOLLC1.488e-3958.33Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_SOLTU2.539e-3958.33Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU4.330e-3956.67Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU5.655e-3957.50Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI9_ORYSJ1.260e-3858.97Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_PEA2.807e-3860.00Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_SOLTU4.788e-3857.50Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI3_TOBAC1.067e-3756.67Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835465 ID=CF835465; Name=CF835465; organism=Citrus sinensis; type=EST; length=542bp
AAGNCTTGGGGGNGGACTTGNTGAANAATCCCGTCCTACTTGCCACTGAT
CCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCC
ACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAG
CAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAAT
ATAATCAACGGTGGAATTGAATGTGGCTACGTTGGGAATGACGCTGTACG
TAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGC
CTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTTAATCTG
ATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCT
TAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGAC
AACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGATCCA
ACATGGATCAATGAGTCTTCTCCATCAAAAAAAAAAAAAAAA
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