CF835466

Overview
NameCF835466
Unique NameCF835466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3475 contig Csv1_Contig3475:167..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.428e-29
Identity = 81/155 (52.26%), Postives = 99/155 (63.87%), Query Frame = -3
Query:  170 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRL----PWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGY-NPMGSEE--AHIPVHAQNVTGFIPGWML 613
            E LQR QRNLLGEDL PL++KELEQL+ QL+ SLK VRS KTQ  +DQLSDLQ +EQ+LLE N+AL   LD+      V  H +     WE     QN+    +  QS+G +QPL   NP LQ+GY NP+ SE+  A     AQ   G+IPGWML
Sbjct:  103 ENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDD---MIGVRSHHMGGGGGWEGG--EQNVTYAHHQAQSQGLYQPLE-CNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWML 251          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.580e-28
Identity = 73/150 (48.67%), Postives = 92/150 (61.33%), Query Frame = -3
Query:  170 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLS-GGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWML 616
            V++LQR  RNLLGEDL  LSTKELEQL+HQL+ SL+ +RS KTQ  +DQL+DLQK+E++L E N+AL   L+ES  S      R  W+   P             +GFF+PL    N  LQIGYN    ++ +    AQNV GF  GWML
Sbjct:  101 VDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCAS-----FRPNWDVRQP------------GDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWML 233          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.282e-26
Identity = 75/155 (48.39%), Postives = 95/155 (61.29%), Query Frame = -3
Query:  173 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISH-QVPPH---RLPWEASSPR--QNIPSNRYPFQSEGFFQPL-SGGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 616
            VE LQR QRNLLGEDL  L  KELEQL+ QL++SL+H+RST+TQ  +DQL+DLQ+REQ+L E NK L + L+ESN  H QV  H    L +E  SP   Q +P    P    GFF  L +   P LQIG+ P         ++   VT F+P W+
Sbjct:  104 VENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVP----PHGGNGFFHSLEAAAEPTLQIGFTPE-------QMNNSCVTAFMPTWL 247          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.247e-25
Identity = 76/154 (49.35%), Postives = 97/154 (62.99%), Query Frame = -3
Query:  170 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKAL-MKNLDESNISHQVPPHRL--PWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGY-NPMGSEEAHIPVHAQNV--TGFIPGWML 613
            E LQR QRNLLGEDL PL++KELEQL+ QL+ SLK VR  KTQ  +DQLSDLQ +E +LL+ N+AL MK  D   + H    H +   WE    +QNI        S+G +Q L   +P LQIGY +P+ SE+  + V  Q+    G+IPGWML
Sbjct:  103 ENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH----HHIGGGWEGGD-QQNIAYGHPQAHSQGLYQSLE-CDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWML 250          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.379e-24
Identity = 69/151 (45.70%), Postives = 95/151 (62.91%), Query Frame = -3
Query:  173 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQ--SEGFFQPLSGGNPILQIGYNPMGSEEAHIPVHAQNVTGFI-PGWM 616
            VE LQR QRNLLGEDL PL +KELEQL+ QL++SL+ +RST+TQ  +DQL+DLQ+REQ+L E NK L +  +ES+ ++Q    +  W+ S+    +   R P Q   E F+ PL    P LQIGY+   S+       A  V  ++ PGW+
Sbjct:  101 VEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQ----QQVWDPSNTHA-VGYGRQPAQHHGEAFYHPLE-CEPTLQIGYH---SDITMATATASTVNNYMPPGWL 242          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23
Identity = 68/155 (43.87%), Postives = 93/155 (60.00%), Query Frame = -3
Query:  173 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESN--ISHQVPPHRLPWEASS---PRQNIPSNRYPFQ-SEGFFQPL-SGGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 616
            VE LQR QRNLLGEDLD L  KELE L+ QL++SLKHVR+T+T+  VDQL++LQ++EQ++ E N+ L + L+ESN     QV      WE        +  P  + P     GFF PL + G P LQIGY      E H  +++  +  ++P W+
Sbjct:  104 VENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQV------WEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY----PAEHHEAMNSACMNTYMPPWL 248          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23
Identity = 68/155 (43.87%), Postives = 93/155 (60.00%), Query Frame = -3
Query:  173 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESN--ISHQVPPHRLPWEASS---PRQNIPSNRYPFQ-SEGFFQPL-SGGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 616
            VE LQR QRNLLGEDLD L  KELE L+ QL++SLKHVR+T+T+  VDQL++LQ++EQ++ E N+ L + L+ESN     QV      WE        +  P  + P     GFF PL + G P LQIGY      E H  +++  +  ++P W+
Sbjct:  104 VENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQV------WEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY----PAEHHEAMNSACMNTYMPPWL 248          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23
Identity = 63/162 (38.89%), Postives = 93/162 (57.41%), Query Frame = -3
Query:  170 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDE-----------SNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIG--YNPMGSEEAHIPVHAQNVTGFIPGWML 616
            VE+LQ  QR+LLGE+L  +   ELE L+ Q++ SL+ +RSTK +  +DQLSDL+ +E++LLE N+ L + L++           S+ + Q   H+   +  S  Q+ P    P Q  GFF+PL  GN  LQ+   YN   +   +    +QNV GF PGWM+
Sbjct:  102 VEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNP----PIQEAGFFKPLQ-GNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWMV 258          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.093e-21
Identity = 60/147 (40.82%), Postives = 84/147 (57.14%), Query Frame = -3
Query:  173 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 613
            E LQR QRNLLGEDL PL++KELE L+ QL+ SLK +RST+TQ  +DQL DLQ++E  L E N+ L + L E +  +      L W+ ++            Q +GFF PL    P LQIGY    ++   +     +V  ++ GW+
Sbjct:  104 EALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN------LQWQQNAQDVGYGRQATQTQGDGFFHPLE-CEPTLQIGYQ---NDPITVGGAGPSVNNYMAGWL 240          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 62/147 (42.18%), Postives = 85/147 (57.82%), Query Frame = -3
Query:  173 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 613
            + LQR QRNLLGEDL PLSTKELE L+ QL++SLK +R+ +TQ  +DQL+DLQ +E++L E NK L   L +    +Q+P    P +          ++    S+ FFQPL    PILQIGY          P    +V  ++ GW+
Sbjct:  106 DALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLAD---GYQMPLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLE-CEPILQIGYQGQQDGMGAGP----SVNNYMLGWL 244          
The following BLAST results are available for this feature:
BLAST of CF835466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SEP1_ARATH2.428e-2952.26Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
CMB1_DIACA4.580e-2848.67MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS8_ORYSJ3.282e-2648.39MADS-box transcription factor 8 OS=Oryza sativa su... [more]
SEP2_ARATH1.247e-2549.35Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AGL9_ARADE1.379e-2445.70Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
MADS7_ORYSJ5.794e-2343.87MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI5.794e-2343.87MADS-box transcription factor 7 OS=Oryza sativa su... [more]
AGL3_ARATH5.794e-2338.89Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
AGL9_PETHY1.093e-2140.82Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
SEP3_ARATH3.179e-2142.18Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835466 ID=CF835466; Name=CF835466; organism=Citrus sinensis; type=EST; length=621bp
CATTACAAGAAAAAACCTTTGGAACAATACTTATTACTGTTTGCAGCAAA
TAATAATTGCAGGTATACATAAAGCGAAAGAGATGAAATCCCAACCATCA
AAAAGGAAATTTATTATAATTCCAATGATTAAGGTCATGTGAACTCATTT
TATTATCCAAGTATGATCTAAGCATCCAACCAGGGATGAATCCGGTGACA
TTTTGGGCATGGACTGGAATATGTGCCTCCTCCGAACCCATAGGATTGTA
CCCAATTTGCAAAATGGGATTGCCTCCCGATAGAGGCTGAAAGAACCCTT
CTGATTGAAATGGGTAACGATTGGAAGGTATGTTTTGCCGTGGTGATGAT
GCTTCCCATGGTAGTCGATGAGGAGGAACTTGATGAGAAATATTGCTTTC
GTCCAAGTTCTTCATCAGGGCTTTGTTAAGTTCAAGGAGAACTTGTTCTC
TTTTTTGAAGATCGGAAAGCTGATCAACCGTACATTGAGTCTTTGTTGAC
CTAACATGCTTCAAGGATGTCTCTAATTGATGATCAAGCTGCTCAAGCTC
CTTTGTGCTGAGCGGATCCAAATCTTCTCCGAGAAGGTTCCTCTGACATC
GCTGTAGGAGCTCAACTGGTG
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