CF835467

Overview
NameCF835467
Unique NameCF835467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835467_ssr26 microsatellite CF835467_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 5.693e-49
Identity = 98/136 (72.06%), Postives = 114/136 (83.82%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCS+  + KTLERY RCS G+ E ++P  ET+S+YQEYL+LK  V++LQRS RNLLGE L  LST ELEQLEHQL+ SL+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLR 136          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.714e-45
Identity = 94/137 (68.61%), Postives = 112/137 (81.75%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHE-GNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCSS  ++KTL+RY +CS G+ E  N+P  E +++Y+EYL+LK   E LQR QRNLLGE L PL++ ELEQLE QL+ SLK
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.819e-45
Identity = 93/137 (67.88%), Postives = 112/137 (81.75%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHE-GNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE +LI+FS RGKLYEFCS+  ++KTLERY +CS G+ E  N+P  E +++Y+EYL+LK   E LQR QRNLLGE L PL++ ELEQLE QL+ SLK
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 8.508e-45
Identity = 95/140 (67.86%), Postives = 110/140 (78.57%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIET----QSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCSS  +++TLERY +C+ GA E N P  E      S+ QEYL+LK   + LQR+QRNLLGE L PLST ELE LE QL++SLK
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLK 140          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.895e-44
Identity = 95/140 (67.86%), Postives = 110/140 (78.57%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIET----QSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKRVEN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCS+  ++KTLERY +C+ GA EGN    E      S+ QEYL+LK   E LQRSQRNL+GE L PLS+ +LE LE QL++SLK
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLK 140          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 2.475e-44
Identity = 96/139 (69.06%), Postives = 110/139 (79.14%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGN---RPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCSS  ++KTLERY +C+ GA E N   R  +E  S+ QEYL+LK   E LQRSQRNLLGE L PL++ ELE LE QL+ SLK
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEI-SSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLK 138          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.475e-44
Identity = 92/136 (67.65%), Postives = 108/136 (79.41%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELK +EN INR+VTFA+RR  LL KA ELSVLCDAE ALI+FS RGKLYEFCSS  ++KTLE+Y +C+ G+ E      ETQS+ QEYL+LK  VE LQRSQRNLLGE L PL + ELEQLE QL++SL+
Sbjct:    1 MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQKCNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLR 136          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 7.202e-44
Identity = 94/140 (67.14%), Postives = 109/140 (77.86%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIET----QSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCSS  +++TLERY +C+ G  E N P  E      S+ QEYL+LK   + LQR+QRNLLGE L PLST ELE LE QL++SLK
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLK 140          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.096e-43
Identity = 95/139 (68.35%), Postives = 109/139 (78.42%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGN---RPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+E  INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCSS  ++KTLERY +C+ GA E N   R  +E  S+ QEYL+LK   E LQRSQRNLLGE L PL++ ELE LE QL+ SLK
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEI-SSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLK 138          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.150e-41
Identity = 90/139 (64.75%), Postives = 106/139 (76.26%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHE---GNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCS+  + KTLE+Y +CS    E    NR   + +++  EYL+LK  VE LQR+QRNLLGE LD L   ELE LE QL++SLK
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLK 139          
The following BLAST results are available for this feature:
BLAST of CF835467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
CMB1_DIACA5.693e-4972.06MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
SEP1_ARATH1.714e-4568.61Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
SEP2_ARATH3.819e-4567.88Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP3_ARATH8.508e-4567.86Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MTF1_PEA1.895e-4467.86MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_PETHY2.475e-4469.06Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
AGL9_ARADE2.475e-4467.65Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL9_SINAL7.202e-4467.14Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC2.096e-4368.35Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MADS7_ORYSJ1.150e-4164.75MADS-box transcription factor 7 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835467 ID=CF835467; Name=CF835467; organism=Citrus sinensis; type=EST; length=472bp
TTAACCAACACCAGTATAGGTAGAAAGAGAGAGAGAGTGAGTGTGTGGAA
ATCTCTTGAAAATTATGGGGAGAGGAAGAGTTGAACTGAAGAGAGTAGAG
AACGATATTAACAGGGAAGTTACTTTTGCCGAGAGAAGAAATGGCCTGCT
GAACAAAGCTGATGAGCTCTCAGTTCTATGTGATGCTGAAGATGCTCTTA
TCATGTTCTCTAAGCGTGGCAAGCTCTATGAGTTCTGTAGCAGCCCTATC
ATTATGAAAACGCTTGAACGATATCATCGGTGCAGTTGTGGTGCACACGA
AGGCAACCGGCCTCCCATTGAAACTCAGAGCACCTACCAGGAATATTTGA
GGTTGAAAACAGCAGTTGAGCTCCTACAGCGATCTCAGAGGAACCTTCTT
GGAGAACATTTGGATCCGCTCAGCACAAATGAGCTTGAGCAGCTTGAGCA
TCAACTAGAGACATCCTTGAAG
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