CF835474

Overview
NameCF835474
Unique NameCF835474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1708 contig Csv1_Contig1708:477..1219. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835474 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.979e-61
Identity = 115/130 (88.46%), Postives = 124/130 (95.38%), Query Frame = -3
Query:  352 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKS 741
            GNN+VALGTDLSFDTATGNFTKCNAGLS++  DLIASL LNDKGDT++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH LDPLT+VKARVN+YG+ASALIQHEWRPKSLFTISGEVDTRAIEKS
Sbjct:  136 GNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKS 265          
BLAST of CF835474 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 8.054e-55
Identity = 97/129 (75.19%), Postives = 118/129 (91.47%), Query Frame = -3
Query:  355 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEK 741
            G N +ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+KGD L ASYYH VSPLT+TAVGAE+ HSFS+NEN +T+GTQH LDPLTSVKAR+NN+G+ASAL+QHEWRPKSLFT+SGEVDT++++K
Sbjct:  136 GTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDK 264          
BLAST of CF835474 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.857e-51
Identity = 97/130 (74.62%), Postives = 117/130 (90.00%), Query Frame = -3
Query:  352 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKS 741
            G+N +A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD LNASYYHIV+PL NTAVGAE++H  SS ++T+T+GTQH+LDPLTSVKARVN+ G ASALIQHEW+PKS FTISGEVDT++I+KS
Sbjct:  136 GSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKS 265          
BLAST of CF835474 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.733e-47
Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = -3
Query:  352 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKS 741
            G  ++A+G D+S DTATGN TK NAGLS+++ DLIASL LN+KGD+L ASYYHIV+  + TAVGAELTHSFSSNEN+LT GTQH LDPLT VKAR NN G+ASAL+QHEWRPKS++TIS EVDT+AI+KS
Sbjct:  135 GTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKS 263          
BLAST of CF835474 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.068e-46
Identity = 87/130 (66.92%), Postives = 106/130 (81.54%), Query Frame = -3
Query:  352 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKS 741
            G N++A G D+SFDT  G  TK NA +++   DLI SLTLN+KGD L+ASYYH ++PL+NTAVG +++H FS+ ENT T+GTQHALDPLT+VK RV N G+ASALIQHEWRPKSL TIS EVDT+AIEKS
Sbjct:  136 GTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKS 265          
BLAST of CF835474 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.232e-46
Identity = 95/130 (73.08%), Postives = 109/130 (83.85%), Query Frame = -3
Query:  352 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKS 741
            G +++A+G D+S DTAT NF K NA LSYT+ DLIASL LN+KGD+L ASYYHIV   + TAVGAELTHSFSSNEN+LT GTQH LDPLT VKAR+NN G+ASALIQHE+ PKSL TIS EVDT+AIEKS
Sbjct:  136 GTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKS 264          
BLAST of CF835474 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.750e-44
Identity = 85/130 (65.38%), Postives = 109/130 (83.85%), Query Frame = -3
Query:  352 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKS 741
            G N ++LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+ LNASYY IVSP  +T VGAE++H+F++ EN +T+GTQHALDPLT+VKARVNN G A+ALIQHEWRPKS FT+SGEVD++AI+KS
Sbjct:  136 GTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKS 263          
BLAST of CF835474 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.431e-43
Identity = 86/130 (66.15%), Postives = 105/130 (80.77%), Query Frame = -3
Query:  352 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKS 741
            G+ ++++G D+SFDTAT +FTK NA LS T  DLIASL LN+ GDTL ASYYH+V   + TAVGAEL+HS S NE+TL  G+QH+LDP T++K R NNYG ASAL+QHEWRPKS  TISG+VDT+AIEKS
Sbjct:  137 GSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKS 266          
The following BLAST results are available for this feature:
BLAST of CF835474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC2_SOLTU1.979e-6188.46Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU8.054e-5575.19Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC1_ARATH1.857e-5174.62Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ4.733e-4772.31Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC_PEA3.068e-4666.92Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_WHEAT5.232e-4673.08Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC2_ARATH3.750e-4465.38Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC_MAIZE2.431e-4366.15Outer plastidial membrane protein porin OS=Zea may... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E18_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835474 ID=CF835474; Name=CF835474; organism=Citrus sinensis; type=EST; length=743bp
TTTTTTTTTTTTCTCCACATTTAAATTATTATATCGCTGACCTTAAAAGG
CCCTTGTTGGGGATGAATGGACGGAAATCCCTAGAAGAAACAGCCAATGT
TGATTTAGGACATCAGCCAGAATTATTTTTACAACCCGCAGCCACAACAT
TCGTGAAACCCAAAAGCACCCCACGGTGAAATCACAAGTTTTAGGAAAGG
GGAAAAAAAAAGAAAGAATATAGGTTTCACATCATTTTTCGTAACAATTA
TTGTACTCCACCACTCAAAAACATTGTTTCTCTCCTTCCCCCGACGCCAA
GATTAATTGCTTAGCCTATGGCTTGAGAGCTAACGCCAGCCCAATTTTAG
CACTCTTTTCAATGGCCCTGGTGTCTACCTCTCCTGAGATAGTAAATAGA
GATTTGGGACGCCACTCGTGCTGGATAAGAGCACTTGCCCTGCCATAGTT
GTTCACACGGGCCTTCACCGAGGTCAAAGGATCAAGAGCATGCTGAGTTC
CGATTGTCAGAGTGTTCTCGTTGCTTGAAAAGCTATGGGTCAGCTCCGCC
CCAACAGCGGTATTGGTCAGTGGGCTTACAATGTGGTAGTAGGAAGCATT
AAGGGTGTCACCTTTGTCATTCAATGTCAGGGAAGCAATGAGGTCAATAT
GTGTATAGCTCAGCCCCGCATTGCACTTGGTGAAGTTGCCAGTGGCAGTA
TCAAATGAGAGATCAGTCCCAAGAGCAACAGAATTGTTTCCAA
back to top