CF835480

Overview
NameCF835480
Unique NameCF835480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10323 contig Csv1_Contig10323:35..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835480 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 2 
Query:  377 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXXXXXXXXV-TCGKTPPAGFTC 616
            ID LKLGACVD+LGGL+HIG+G      CCP+L GLV+L+AA+                        +  CGK PP  F C
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343
The following BLAST results are available for this feature:
BLAST of CF835480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC1.748e-1143.2136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01E21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835480 ID=CF835480; Name=CF835480; organism=Citrus sinensis; type=EST; length=620bp
GAAAGAAGAGAGCTTTAAAATAAAGAAAAAAAAAAAAATGGACTCCTCCA
AACTCTCAGCTCTCCTCATCATTTGCATGCTTTTCATCTCCACAGCCACT
CCCATTCTTGGCTGTGGCACGTGTGGCAAGCCGCACCCGAAGCACAGGAA
ACCTAGGCAGCCTAGACCCATCGGTCTTCCTCCCATTGTCAAACCCCCAG
TTCCCTTGCCACCAGTCACTCTCCCTCCGGTGACCGTCCCGCCGATCAAG
CCACCAGTCGACCTCCCCACTCTCCCACCAGTTGCACTGCCTCCAGTTCT
CCCTAATCCACCAAGTGCTAGGAAGCCATGCCCATGTTCATACACACCAC
CTCCACCAGCGGCTGCCACATGCCCCATTGACACCCTCAAATTGGGTGCT
TGTGTGGACCTTCTTGGTGGGTTGGTTCACATTGGTCTTGGTGACCCAGT
TGTTAACCAATGCTGCCCAGTTCTACAAGGACTTGTTGAGTTAGAAGCTG
CTGTCTGCTTGTGCACTACTCTCAAGCTCAAGCTGCTTAATCTTAACATC
TATCTTCCACTTGCTCTTCAGCTTCTTGTCACTTGCGGAAAGACACCACC
CGCTGGTTTCACTTGCACTC
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