CF835482

Overview
NameCF835482
Unique NameCF835482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 71/220 (32.27%), Postives = 112/220 (50.91%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGD-RLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +ND   +VTGAS G+GR   LDLA++G  +V      + +   + DEI K    +A+AV+ DV ++   +++ +++    F  ID+L+NNAG+       +   E+EWD  I  NL G +  +K V  +M                       PG   Y ++KAG+  +TK  A EL   NI VN+I+PG   +++T+ L   K + +  LK +PL  FG
Sbjct:    2 LNDKTAIVTGASRGIGRSIALDLAKSGANVVVNYSGNEAKANEVVDEI-KSMGRKAIAVKADV-SNPEDVQNMIKETLSVFSTIDILVNNAGITRD-NLIMRMKEDEWDDVININLKGVFNCTKAVTRQMMKQRSGRIINVSSIVGVSGN---PGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTDKL--AKDVQDEMLKQIPLARFG 213          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 72/223 (32.29%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINK-PSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVC---IRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +   V ++TGA+SG+G+   L  A+ G  ++A     + L SL  E    P  +    + +    D   I+  V+K  + + RIDVL+NNAG+       +   EE+WD  I  NL G + V++ V    I+ R+                     PG   YA+SKAG+  MTK  A EL   NIRVN+++PG   + +TE L +K      AL  +PL  FG
Sbjct:    3 LEGKVCLITGAASGIGKATTLLFAQEGATVIAGDISKENLDSLVKEAEGLPGKVDPYVLNV---TDRDQIKEVVEKVVQKYGRIDVLVNNAGITRDALL-VRMKEEDWDAVINVNLKGVFNVTQMVVPYMIKQRNGSIVNVSSVVGIYGN------PGQTNYAASKAGVIGMTKTWAKELAGRNIRVNAVAPGFIETPMTEKLPEK--ARETALSRIPLGRFG 213          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_AQUAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aquifex aeolicus GN=fabG PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 66/227 (29.07%), Postives = 118/227 (51.98%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWR----IDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSD 671
            ++   V +VTG++ G+GR     LA AG  ++     G+R K++ +EI     ++A  VE+++ +     E S+ KA+E  +     ID+L+NNAG+    K  L  +  +W+  +K NLTG++LV++    +M                    G + G V Y+++KAGL   TK +A EL   N+ VN+++PG   +++T  L ++  +     + +PL  FG+ +
Sbjct:    4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS-----EESINKAFEEIYNLVDGIDILVNNAGITRD-KLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKM--IKQRWGRIVNISSVVGFTGNV-GQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEE--IKQKYKEQIPLGRFGSPE 219          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLI-VAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQL--PGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +VTGAS G+GR   L LA  G  + V  A   D+ +++ +EI K   + + A++ +V A G  ++  +++    F  +DVL+NNAG+       +   E+EWD  I TNL G      + CI+                     G +  PG   Y ++KAG+  +TK  A EL    I VN+++PG  +S++T  L     L +  L+ +PL+ FG
Sbjct:    6 LVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEI-KAKGVESFAIQANV-AKGDEVKEMIKEVVSQFGSVDVLVNNAGITKD-NLLMRMKEQEWDDVIDTNLKGV-----FNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNALSDD--LKDQMLEQIPLKRFG 211          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_STAEQ (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fabG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLI-VAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQL--PGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +VTGAS G+GR   L LA  G  + V  A   D+ +++ +EI K   + + A++ +V A G  ++  +++    F  +DVL+NNAG+       +   E+EWD  I TNL G      + CI+                     G +  PG   Y ++KAG+  +TK  A EL    I VN+++PG  +S++T  L     L +  L+ +PL+ FG
Sbjct:    6 LVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEI-KAKGVESFAIQANV-AKGDEVKEMIKEVVSQFGSVDVLVNNAGITKD-NLLMRMKEQEWDDVIDTNLKGV-----FNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNALSDD--LKDQMLEQIPLKRFG 211          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_STAAW (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 66/216 (30.56%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLI-VAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQL--PGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +VTGAS G+GR   L LA  G  + V  A   ++ +++ +EI K   + + A++ +V AD   +++ +++    F  +DVL+NNAG+       +   E+EWD  I TNL G      + CI+                     G +  PG   Y ++KAG+  +TK  A EL    I VN+++PG  +S++T+ L  +  L    L  +PL  FG
Sbjct:    8 LVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI-KAKGVDSFAIQANV-ADADEVKAMIKEVVSQFGSLDVLVNNAGITRD-NLLMRMKEQEWDDVIDTNLKGV-----FNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDE--LKEQMLTQIPLARFG 213          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_STAAS (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 66/216 (30.56%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLI-VAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQL--PGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +VTGAS G+GR   L LA  G  + V  A   ++ +++ +EI K   + + A++ +V AD   +++ +++    F  +DVL+NNAG+       +   E+EWD  I TNL G      + CI+                     G +  PG   Y ++KAG+  +TK  A EL    I VN+++PG  +S++T+ L  +  L    L  +PL  FG
Sbjct:    8 LVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI-KAKGVDSFAIQANV-ADADEVKAMIKEVVSQFGSLDVLVNNAGITRD-NLLMRMKEQEWDDVIDTNLKGV-----FNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDE--LKEQMLTQIPLARFG 213          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_STAAR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 66/216 (30.56%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLI-VAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQL--PGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +VTGAS G+GR   L LA  G  + V  A   ++ +++ +EI K   + + A++ +V AD   +++ +++    F  +DVL+NNAG+       +   E+EWD  I TNL G      + CI+                     G +  PG   Y ++KAG+  +TK  A EL    I VN+++PG  +S++T+ L  +  L    L  +PL  FG
Sbjct:    8 LVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI-KAKGVDSFAIQANV-ADADEVKAMIKEVVSQFGSLDVLVNNAGITRD-NLLMRMKEQEWDDVIDTNLKGV-----FNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDE--LKEQMLTQIPLARFG 213          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_STAAN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 66/216 (30.56%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLI-VAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQL--PGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +VTGAS G+GR   L LA  G  + V  A   ++ +++ +EI K   + + A++ +V AD   +++ +++    F  +DVL+NNAG+       +   E+EWD  I TNL G      + CI+                     G +  PG   Y ++KAG+  +TK  A EL    I VN+++PG  +S++T+ L  +  L    L  +PL  FG
Sbjct:    8 LVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI-KAKGVDSFAIQANV-ADADEVKAMIKEVVSQFGSLDVLVNNAGITRD-NLLMRMKEQEWDDVIDTNLKGV-----FNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDE--LKEQMLTQIPLARFG 213          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_STAAM (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fabG PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 66/216 (30.56%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLI-VAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQL--PGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +VTGAS G+GR   L LA  G  + V  A   ++ +++ +EI K   + + A++ +V AD   +++ +++    F  +DVL+NNAG+       +   E+EWD  I TNL G      + CI+                     G +  PG   Y ++KAG+  +TK  A EL    I VN+++PG  +S++T+ L  +  L    L  +PL  FG
Sbjct:    8 LVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI-KAKGVDSFAIQANV-ADADEVKAMIKEVVSQFGSLDVLVNNAGITRD-NLLMRMKEQEWDDVIDTNLKGV-----FNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDE--LKEQMLTQIPLARFG 213          
The following BLAST results are available for this feature:
BLAST of CF835482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
FABG_BACSU5.014e-2132.273-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
FABG_THEMA1.613e-1932.293-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
FABG_AQUAE1.613e-1929.073-oxoacyl-[acyl-carrier-protein] reductase OS=Aqui... [more]
FABG_STAES1.366e-1831.023-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAEQ1.366e-1831.023-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAW1.156e-1730.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAS1.156e-1730.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAR1.156e-1730.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAN1.156e-1730.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAM1.156e-1730.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835482 ID=CF835482; Name=CF835482; organism=Citrus sinensis; type=EST; length=683bp
GCGAAATTAACGACAATGTGGTAATGGTGACCGGCGCATCCTCTGGTTTA
GGCCGAGAATTTTGTCTCGACCTCGCCAGAGCCGGCTGCCTGATCGTAGC
CGCGGCACGGCCCGGCGACCGCCTCAAGTCTCTCTGCGACGAGATCAATA
AGCCGAGCAGTATTAGAGCCGTGGCCGTAGAGCTAGACGTATGCGCCGAC
GGCGCCGCCATTGAGAGTTCCGTACAGAAGGCTTGGGAAGCCTTCTGGCG
AATCGATGTTTTGATTAATAATGCCGGTGTTAGAGGCAGTGTGAAGAGTC
CGTTGGATTGGACCGAGGAGGAGTGGGATCACAATATCAAAACGAATTTA
ACAGGATCTTGGTTGGTTTCCAAGTATGTATGCATTCGAATGCGTGATGC
AAATCTGGGAGGATCAATAATTAACATATCTTCTATTGCTGGTATTAATC
GTGGACAGTTACCTGGAGGTGTTGCCTATGCTTCTTCCAAGGCAGGCCTT
AATTCCATGACTAAGGTCATGGCATTGGAACTGGGGGTGCACAACATCAG
AGTTAACTCAATATCACCTGGACTTTTCATATCTGAGATTACTGAAGGTC
TTATGCAAAAAAAATGGCTAAATAATGTTGCCTTGAAAACCGTCCCTTTA
AGAGAATTTGGCACCTCAGATCCAGCATTGACA
back to top