CF835484

Overview
NameCF835484
Unique NameCF835484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_CAEEL (Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.227e-47
Identity = 101/197 (51.27%), Postives = 129/197 (65.48%), Query Frame = 1
Query:  154 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQN 735
            L   L+  FG  QFR +Q   I + L G D F LMPTG GKS+CYQ+PA+  PG+ +VVSPL +L+E+Q + +KE GI  E L++      + KIY +L SG PS++LLYVTPE ++A+    S    +H RGLL    IDEAHC+S WGHDFRP Y KLSSLR     P VPI+ALTATA PK+  D  + L +QN
Sbjct:  235 LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQN 431          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_HUMAN (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 94/196 (47.96%), Postives = 127/196 (64.80%), Query Frame = 1
Query:  139 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 723
            H KE ++K+    FG   FR  QL+AI A L G DCF LMPTGGGKS+CYQ+PA   PG+ +V+SPL +L+ +QV  L    I   +L+  +T    T IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHDFR  Y++++ LR   P VP++ALTATA P+VQKD++  L
Sbjct:  651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQL 845          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_MOUSE (Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46
Identity = 93/196 (47.45%), Postives = 126/196 (64.29%), Query Frame = 1
Query:  139 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 723
            H KE ++K+    FG   FR  QL+AI A L G DCF LMPTGGGKS+CYQ+PA   PG+ +V+SPL +L+ +QV  L    I   +L+  +T      IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHDFR  Y++++ LR   P VP++ALTATA P+VQKD++  L
Sbjct:  659 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQL 853          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_CHICK (Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46
Identity = 97/220 (44.09%), Postives = 136/220 (61.82%), Query Frame = 1
Query:   94 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 723
            ++++S+S+   + P HE+         E ++K+    FG   FR  QL+AI A L G DCF LMPTGGGKS+CYQ+PA    G+ +V+SPL +L+ +QV  LK   IA  +L+   T    +K Y  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHDFR  Y++L+ LR     VP++ALTATA P+VQKD+   L
Sbjct:  356 ISVKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQL 575          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_DROME (Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.958e-45
Identity = 90/191 (47.12%), Postives = 123/191 (64.40%), Query Frame = 1
Query:  166 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735
            L + FG   FR  QL  I A L G DCF LMPTGGGKS+CYQ+PA+   G+ +V+SPL +L+ +Q+  L    I  + LS  Q M     IY DL+S  P ++LLYVTPE ++++  F   L  ++S   ++   IDEAHC+S WGHDFRP Y+KL  L+   P+VP +ALTATA P+V+ D++  L L+N
Sbjct:  729 LSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLKN 919          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_XENLA (Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.698e-45
Identity = 91/196 (46.43%), Postives = 126/196 (64.29%), Query Frame = 1
Query:  139 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 723
            H KE ++K+    FG  +FR  QL+AI A L G DCF LMPTGGGKS+CYQ+P    PG+ +V+SPL +L+ +QV  L    I   +L+  +T      IY  L    P ++LLYVTPE + A+   +S ++ ++ R LL    IDEAHC+S WGHDFRP Y++L+ LR     VP++ALTATA P+V+KD++  L
Sbjct:  603 HSKE-MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQL 797          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_HAEIN (ATP-dependent DNA helicase recQ OS=Haemophilus influenzae GN=recQ PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 1
Query:  142 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735
            EK   + +L+  FG+  FR  Q + I A L+G+D   +M TG GKS+CYQIPAL   G+ LV+SPLI+LM++QV  L+  GI  +FL+S+QT++ + ++   L SG+  L+LLYV+PE   T  F     ++ S   +  +AIDEAHCIS WGHDFRP Y +L  L+   PD PI+ALTATA    Q+D++  L L+N
Sbjct:   12 EKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQ--LKLLYVSPEKVMTNSFF----QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKN 203          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_ECOLI (ATP-dependent DNA helicase recQ OS=Escherichia coli (strain K12) GN=recQ PE=1 SV=5)

HSP 1 Score: 168.703 bits (426), Expect = 2.926e-41
Identity = 89/192 (46.35%), Postives = 123/192 (64.06%), Query Frame = 1
Query:  160 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735
            ++L+  FG+ QFR  Q + I  VLSGRDC  +MPTGGGKS+CYQIPAL   G+ +VVSPLI+LM++QV  L+  G+A   L+STQT + + ++     +G+  +RLLY+ PE      F+  L   +      L+A+DEAHCIS WGHDFRP Y  L  LR   P +P +ALTATA    ++D++  L L +
Sbjct:   15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND 200          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ5_HUMAN (ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.515e-41
Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = 1
Query:  133 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732
            P   +  +   L+  FG   F+   Q  A  AV+ G +D F  MPTG GKS+CYQ+PAL   GI +VVSPLIAL+++QV  L    +    L+S  + Q + ++  DL+  KP  ++LY+TPE+ A+  F   L  + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L   P +ALTATA P+VQ+DV  +L L+
Sbjct:    9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLK 210          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_RAT (ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.515e-41
Identity = 81/191 (42.41%), Postives = 125/191 (65.45%), Query Frame = 1
Query:  163 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732
            +LR  F   +FR  QL+ + A ++ +D F +MPTGGGKS+CYQ+PAL   G  LV+ PLI+LME+Q++ L++ GI+   L+S+ + +    ++ ++ +    L+L+YVTPE +  +  FMS+L+K +  G L  VA+DE HC S WGHDFRP Y+ L  L+   P++ ++ LTATA   V KD  + LC++
Sbjct:   82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATATNHVLKDAQKILCVE 272          
The following BLAST results are available for this feature:
BLAST of CF835484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
BLM_CAEEL1.227e-4751.27Bloom syndrome protein homolog OS=Caenorhabditis e... [more]
BLM_HUMAN1.356e-4647.96Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1... [more]
BLM_MOUSE6.731e-4647.45Bloom syndrome protein homolog OS=Mus musculus GN=... [more]
BLM_CHICK6.731e-4644.09Bloom syndrome protein homolog (Fragment) OS=Gallu... [more]
BLM_DROME1.958e-4547.12Bloom syndrome protein homolog OS=Drosophila melan... [more]
BLM_XENLA5.698e-4546.43Bloom syndrome protein homolog OS=Xenopus laevis G... [more]
RECQ_HAEIN5.333e-4346.46ATP-dependent DNA helicase recQ OS=Haemophilus inf... [more]
RECQ_ECOLI2.926e-4146.35ATP-dependent DNA helicase recQ OS=Escherichia col... [more]
RECQ5_HUMAN8.515e-4144.06ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=R... [more]
RECQ1_RAT8.515e-4142.41ATP-dependent DNA helicase Q1 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835484 ID=CF835484; Name=CF835484; organism=Citrus sinensis; type=EST; length=737bp
GAGGCTCTCTCGCAGGGACTAAAATCCGTGCCTGCTTGCAAATGAAGCAA
AATTAGGATTTTATTCGTAAATAAAAAAATGAAGAAATCACCGTTGGCGA
TGCAAAGTACAAGTCAGACTCAGAAGAATAAGCCACTACACGAAAAGGAA
GCTCTCGTGAAGCTGTTGAGATGGCATTTTGGCCACGCTCAGTTTAGGGA
CAAACAGCTTGACGCAATACAAGCTGTTTTATCAGGAAGAGACTGCTTCT
GTTTGATGCCAACTGGCGGTGGAAAGTCAATGTGTTATCAAATTCCTGCA
TTGGCCAAACCTGGAATTGTACTTGTTGTTTCTCCTTTAATAGCTTTGAT
GGAAAATCAAGTCATTGGATTGAAGGAGAAAGGAATTGCTGGTGAATTTC
TCTCTTCAACTCAAACGATGCAAGTGAAAACTAAGATATATGAAGACCTT
GATTCTGGAAAACCATCCTTGAGGTTGCTATATGTAACACCAGAATTGAC
TGCAACACCTGGGTTTATGTCAAAGCTGAAGAAGATTCATTCGAGAGGGT
TGTTGAACCTTGTGGCCATTGACGAGGCACATTGCATCTCATCATGGGGC
CATGATTTTAGGCCAAGCTACCGTAAGCTCTCATCTTTGAGGAACTATCT
TCCAGATGTTCCTATATTGGCATTGACAGCAACTGCTGCTCCTAAAGTGC
AGAAGGATGTTATGGAGTCCTTGTGCTTGCAGAATCC
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