CF835501

Overview
NameCF835501
Unique NameCF835501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5115 contig Csv1_Contig5115:381..1147. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.701e-67
Identity = 143/235 (60.85%), Postives = 154/235 (65.53%), Query Frame = 1
Query:   55 SFLRGIDVNRLPSHAD-NEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERXXXXXXXXXXXXXXXRPTHQMAAPNHHRXXXXXXXXXXXXXXHG-PFDALRPRS 753
            +F+RGIDVNR PS A+  +E+              GKRSERE + D        SRGISDDEDGD SRKKLRLSKDQSAILEE+FK+H+TLNP          GLR RQVEVWFQNRRARTKLKQTEVDCEFL+RCCENLTEENRRLQKEV ELRALKLSPQFYM M+PPTTLTMCPSCE                 P  Q A   HHR              HG  FDALRPRS
Sbjct:   66 TFIRGIDVNRPPSTAEYGDEDAGVSSPNSTVSSSTGKRSEREEDTDPQG-----SRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHMSPPTTLTMCPSCEHVSVPP-----------PQPQAATSAHHRSLPVNAWAPATRISHGLTFDALRPRS 284          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.135e-57
Identity = 134/249 (53.82%), Postives = 146/249 (58.63%), Query Frame = 1
Query:   49 PASFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXX-GKRSERE----------PNGDELEMERACSRGISDDED--GDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERXXXXXXXXXXXXXXXRPTHQMAAPNHHRXXXXXXXXXXXXXXHG-PFDALRPRS 753
            P S LR IDVN  PS  + EE+               GKRSERE           + DE+  +R  SRG SD+E+  G+TSRKKLRLSKDQSA LEE+FKEHNTLNP           L  RQVEVWFQNRRARTKLKQTEVDCE+LKRC E LTEENRRLQKE  ELR LKLSPQFY QMTPPTTL MCPSCER                P+      NH                HG  F+ALRPRS
Sbjct:   48 PTSDLRKIDVNSFPSTVNCEEDTGVSSPNSTISSTISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGTSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQMTPPTTLIMCPSCERVGG-------------PSSSNHHHNHRPVSINPWVACAGQVAHGLNFEALRPRS 283          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.317e-55
Identity = 123/201 (61.19%), Postives = 137/201 (68.16%), Query Frame = 1
Query:   55 SFLRGIDVNRLPS----HADNEEEXXXXXXXXXXXXXXGKRSEREPNG----------DELEMERA-CSRGI-SDDEDG-----DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 594
            SFLRGIDVNR PS      ++E                GK+SERE             ++ E+ERA CS G  SDDEDG     D+SRKKLRLSK+Q+ +LEE+FKEH+TLNP           LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCCENLT+ENRRLQKEV ELRALKLSP  YM M PPTTLTMCPSCER
Sbjct:   74 SFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVSSVMSGKKSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPSCER 274          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.538e-55
Identity = 122/194 (62.89%), Postives = 131/194 (67.53%), Query Frame = 1
Query:   55 SFLRGIDVNRLPSHAD----NEEEXXXXXXXXXXXXXXGKRSEREP--NGDELEMERA-CSRGI----SDDEDG---DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 594
            SFLRG +VNR  S        EE               G + +      GDE E ERA CSRG     SDDEDG   D SRKKLRLSKDQ+ +LEE+FKEH+TLNP           LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCC+NLTEENRRLQKEV ELRALKLSP  YM MTPPTTLTMCPSCER
Sbjct:   82 SFLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSLSGNKRDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPHLYMHMTPPTTLTMCPSCER 275          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.456e-54
Identity = 122/210 (58.10%), Postives = 142/210 (67.62%), Query Frame = 1
Query:    4 LFPL*IQTLSLVAPRPASFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXX-GKR--SEREPN-----GDELE--MERACSRGISDDED---GDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 594
            +FP     +S    +   FLR IDVN LP+  D EEE               GKR  +ERE       GD+L+  ++R+ SRG SD+E+   G+T RKKLRLSKDQSA+LE++FKEHNTLNP          GL  RQVEVWFQNRRARTKLKQTEVDCE+LKRC E LTEENRRL+KE  ELRALKLSP+ Y QM+PPTTL MCPSCER
Sbjct:   38 MFPWNQTLVSSSDQQKQQFLRKIDVNSLPTTVDLEEETGVSSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLDRSSSRGTSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMSPPTTLLMCPSCER 247          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.968e-51
Identity = 108/140 (77.14%), Postives = 113/140 (80.71%), Query Frame = 1
Query:  196 EMERACSRGI--SDDEDG----DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKL-SPQFYMQMTPPTTLTMCPSCER 594
            E ERA  RG   SD+EDG    D SRKKLRLSKDQSA+LE+SF+EH TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE LTEENRRLQKEVQELRALKL SP  YM M+PPTTLTMCPSCER
Sbjct:   56 EEERAGLRGGGGSDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCER 195          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.968e-51
Identity = 108/140 (77.14%), Postives = 113/140 (80.71%), Query Frame = 1
Query:  196 EMERACSRGI--SDDEDG----DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKL-SPQFYMQMTPPTTLTMCPSCER 594
            E ERA  RG   SD+EDG    D SRKKLRLSKDQSA+LE+SF+EH TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE LTEENRRLQKEVQELRALKL SP  YM M+PPTTLTMCPSCER
Sbjct:   56 EEERAGLRGGGGSDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCER 195          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.560e-48
Identity = 100/146 (68.49%), Postives = 115/146 (78.77%), Query Frame = 1
Query:  169 EREPNGDEL--EMERACSRGISDDEDGD--TSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 594
            ER  N  ++  E+ER+ SR  ++D D +  ++RKKLRLSKDQSA LE+SFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE+LTEENRRLQKEV+ELR LK S  FYMQ+ P TTLTMCPSCER
Sbjct:  157 ERRSNKRDIDDEVERSASRASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQL-PATTLTMCPSCER 301          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.724e-47
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 1
Query:  202 ERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 594
            +R+CSR  SD++DG ++RKKLRLSK+QSA LEESFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LTEENRRLQKE+ ELRALK    FYM + P TTL+MCPSCER
Sbjct:  160 DRSCSRA-SDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHL-PATTLSMCPSCER 288          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.724e-47
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 1
Query:  202 ERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 594
            +R+CSR  SD++DG ++RKKLRLSK+QSA LEESFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LTEENRRLQKE+ ELRALK    FYM + P TTL+MCPSCER
Sbjct:   73 DRSCSRA-SDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHL-PATTLSMCPSCER 201          
The following BLAST results are available for this feature:
BLAST of CF835501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
HAT4_ARATH5.701e-6760.85Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HAT2_ARATH3.135e-5753.82Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HAT3_ARATH1.317e-5561.19Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
ATHB4_ARATH6.538e-5562.89Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HAT1_ARATH1.456e-5458.10Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
HOX17_ORYSJ1.968e-5177.14Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI1.968e-5177.14Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HAT14_ARATH1.560e-4868.49Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HOX11_ORYSJ1.724e-4772.52Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI1.724e-4772.52Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01F20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835501 ID=CF835501; Name=CF835501; organism=Citrus sinensis; type=EST; length=767bp
GCCTTATTCCCCCTTTAGATCCAAACTCTGAGTCTTGTCGCGCCGAGACC
CGCATCATTTCTTAGAGGAATCGACGTGAATCGATTGCCGTCACATGCAG
ATAACGAAGAAGAAGTGGGCGTCTCATCTCCTAACAGCACGATTTCGAGC
GTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAGCTCGAAAT
GGAGAGAGCTTGCTCTCGTGGTATCAGCGACGATGAAGATGGTGACACTT
CAAGAAAGAAGCTGAGACTTTCTAAAGATCAGTCAGCCATTCTTGAAGAG
AGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGTTGGCGTTGGC
AAAGCAGCTTGGTCTCAGACCTAGACAGGTGGAAGTGTGGTTCCAGAACA
GAAGGGCAAGGACCAAATTGAAGCAAACTGAGGTTGACTGCGAATTCTTG
AAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGA
AGTTCAGGAGCTGAGAGCACTGAAGCTTTCCCCGCAGTTCTACATGCAAA
TGACCCCACCCACAACACTTACGATGTGTCCTTCGTGTGAGCGTGTGGCA
GTCCCACCATCCGCTGCAGCATCAGCCGTTGATCCGGCTAGGCCTACTCA
TCAGATGGCTGCTCCCAATCATCACAGACCCATCCCCATCAACCCTTGGG
CCCCCGCTGCTGCCATCCCTCATGGACCCTTTGATGCACTCCGTCCTCGA
TCGTGATTGTATTCCTC
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