CF835537

Overview
NameCF835537
Unique NameCF835537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:137..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835537 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  248 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 481
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CF835537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA9.109e-37100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA9.109e-37100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE9.109e-37100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE9.109e-37100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR9.109e-37100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL9.109e-37100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ9.109e-37100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH9.109e-37100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT9.109e-37100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT9.109e-37100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835537 ID=CF835537; Name=CF835537; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTATCCAACAGCACATCAAATAGTTTAATACATTAAAT
CCAGAACCACGGAACAATCCTTCAAAGAAAACAGTTCTATATTGCCTCAA
ATATAAAGATAAGATTTAACTTGATAGAATTACAAAGCAGCAACCTAATA
ACAAACTACTAAGAGCCCCATCTACCAGATCAAGATCTAGAGTCAAGATC
TATTAACATTTAATTCCAGAACCCTAAGACAATTAACCCCCAAATCCATA
AAGAGTCCTGCCCTGCCTCTTGAGAGCGTAAACGACGTCCATCGCGGTCA
CGGTCTTTCTCCTGGCGTGCTCAGTGTAGGTCACGGCGTCACGGATGACG
TTCTCCAAGAATATCTTCAGGACGCCACGTGTCTCCTCGTAGATCAAGCC
GCTGATGCGCTTGACTCCACCTCTACGAGCCAAACGCCGGATTGCCGGCT
TTGTGATACCCTGAATGTTATCGCGAAGCACCTTACGGTGACGCTTGGCG
CCTCCCTTTCCCAATCCCTTGCCTCCCTTACCGCGCCCAGACATTTTAGC
GAGGAACTTAAAAGACTTTCCGCTGTTCCTCGAAAGAGAATTTGGATAGA
GAAATTTGAATGTGCCCC
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