CF835561

Overview
NameCF835561
Unique NameCF835561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835561_ssr276 microsatellite CF835561_ssr276:276..287. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835561_ssr511 microsatellite CF835561_ssr511:511..525. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835561 vs. ExPASy Swiss-Prot
Match: YL126_YEAST (Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae GN=YLR126C PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.600e-16
Identity = 60/208 (28.85%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  133 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE--------EGETWDVFHVARGEFPXXXXXXXXXXXXI--TGSCNDAHGNDV-WICKLIALLKQLDSLRKK---VLGICFGHQVLGRSLGAKIGRSLKGWDIGVTTVHXXXXXXXXXXXXXXMPAVLPVIECHRDEVWELPAKAEVIAWSDRTGIEMFKYGDHMMGIQGHPEYTKDI 714
            KK A+L   ED+E+  K +G +  + +++L +        E   ++VFHV +  FP            I  TGS  D+  N++ WI KL + L ++ + + +   V GICFGHQV+  +LG+ +GR+ KG++ GV ++                   L + E H D V+++P   +  A S++   + F   + ++  QGHPE+  D+
Sbjct:    4 KKIAILYTDEDNEW-SKPWGNFVDMAIKLLEQTRKLECIAEDVEYEVFHVQKNVFPQLSDLQKDEYLGIYITGSKYDSFDNEIEWIMKLRSFLNEMLTSKTEYPPVAGICFGHQVIAAALGSSVGRNPKGFEGGVVSLKLNSVGQKLFGAQE-----LNLSEVHSDCVFDVPEGYQNWASSEKCQNQGFYRQNRVLTFQGHPEFNSDV 205          
The following BLAST results are available for this feature:
BLAST of CF835561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YL126_YEAST5.600e-1628.85Putative glutamine amidotransferase YLR126C OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01H18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835561 ID=CF835561; Name=CF835561; organism=Citrus sinensis; type=EST; length=738bp
GAAAACAAGAACACTGACGGGAGGATTTTTTTTTTTTAAAAAAGAAAATT
TCTCTCTCTAAAACCCTAATTTTTAGAGAGAGAAAATAAGACCTCTGCGC
AGAGAAGTAAAACTATTATTCATATGGGTGGGAAAAAGTTTGCGGTGCTT
CTTTGCGCAGAGGATTCGGAGTACGTGAAGAAGAAATACGGAGGGTATTT
TGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGCGAGACGTGGGACGTGT
TCCACGTGGCGCGCGGCGAGTTCCCCGACGACGACGACGTCGGATCGTAC
GACGGTTACGTGATCACGGGCAGCTGCAATGATGCTCACGGGAATGACGT
TTGGATCTGTAAACTCATTGCTCTGCTGAAACAATTGGACTCCTTGAGGA
AGAAAGTTCTCGGCATTTGCTTCGGACACCAGGTACTTGGCCGTTCATTG
GGAGCTAAGATTGGCCGGTCCCTCAAGGGGTGGGACATCGGGGTCACGAC
CGTCCATCTGTCATCATCATCATCATCGAAACTCTTCTCATCTCTCAAAA
TGCCGGCCGTGCTCCCCGTGATAGAATGCCACCGCGACGAGGTCTGGGAG
CTCCCAGCCAAAGCAGAGGTGATAGCATGGTCTGATAGGACCGGGATCGA
AATGTTCAAGTATGGGGACCACATGATGGGCATCCAAGGTCATCCTGAAT
ACACCAAAGACATTCTCCTCCATCTGATTGACCGACTT
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