CF835566

Overview
NameCF835566
Unique NameCF835566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4590 contig Csv1_Contig4590:105..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835566 vs. ExPASy Swiss-Prot
Match: UMP3_ARATH (Uncharacterized protein At5g10860, mitochondrial OS=Arabidopsis thaliana GN=At5g10860 PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.226e-91
Identity = 168/202 (83.17%), Postives = 186/202 (92.08%), Query Frame = 3
Query:    9 IQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY 611
            I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD++K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITV+P+TKVLRAMQLMTDNRIRHIPVI DKGMIGMVSIGDVVRAVV EHREEL RLNA+IQGGY
Sbjct:    5 IRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDVMKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSIGDVVRAVVHEHREELQRLNAYIQGGY 206          
BLAST of CF835566 vs. ExPASy Swiss-Prot
Match: Y525_METKA (Uncharacterized protein MK0525 OS=Methanopyrus kandleri GN=MK0525 PE=4 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 45/140 (32.14%), Postives = 77/140 (55.00%), Query Frame = 3
Query:  228 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA-------------VVSEHREELNRLNAFIQG 605
            +T  +    M +H +G++V+V   E+    GIITERD + K++ QG++       DIM++   +ITV  D +V  A++LM D  IR +P++DD G +IG+V++ D+++                 E  EEL  ++  I+G
Sbjct:   21 ETAVEIAYKMREHGIGSVVIVN--EKDEPIGIITERDLVIKVVSQGKNPDEVIARDIMSQP--VITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLVATIEEEMKKFQEELEELEEVSEIIEG 156          
BLAST of CF835566 vs. ExPASy Swiss-Prot
Match: YHCV_BACSU (CBS domain-containing protein yhcV OS=Bacillus subtilis GN=yhcV PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  225 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 542
            + T+ +A   M QHNVGA+ VV+ G  K   G++T+RD   +   QGR  + T V ++M+ E  L++ +P+  +  A QLM  ++IR +P++D   ++G+V++GD+
Sbjct:   18 NQTIQEAASLMKQHNVGAIPVVEQGVLK---GMLTDRDIALRTTAQGRDGQ-TPVSEVMSTE--LVSGNPNMSLEDASQLMAQHQIRRLPIVDQNNLVGIVALGDL 117          
BLAST of CF835566 vs. ExPASy Swiss-Prot
Match: Y653_METJA (Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii GN=MJ0653 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 37/113 (32.74%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  219 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE---NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 548
            T + ++YD    MT++N+GA+V+V   E     GI+TERD +++++     SK+ K  D++ EE    K+IT+  +  +  A ++M  + I+ +PV+ D  ++G+V+  D+VR
Sbjct:   21 TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVV-----SKNLKPKDVLAEEVMSKKIITIPQNASITEAAKIMATHGIKRLPVVKDGELVGIVTQSDIVR 125          
BLAST of CF835566 vs. ExPASy Swiss-Prot
Match: YBP3_ACIAM (Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  231 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS--TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHREELNRLNAFIQG 605
            T+ +A K M +HN+G+LVV+    Q  V GIITERD     IV+  S++   + V   MT++ K +T   DT+V  A+ +M +N  RH+P+I   G + G+VSI D+ RA++  H  +  +    ++G
Sbjct:   21 TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERD-----IVKAASNRDIDSPVEKYMTKDVKGVT--EDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARALLDVHTMQFGKPAEEVKG 139          
BLAST of CF835566 vs. ExPASy Swiss-Prot
Match: YLBB_BACSU (Uncharacterized protein ylbB OS=Bacillus subtilis GN=ylbB PE=4 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  213 WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY-LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 542
            +CT  D VY+A   M   NVGA+ VV   + +++ GI+T+RD  LR I +  +   S K+ D MTE  K ++V  D  V   + LM  +++R IPV  +K + G+V++GD+
Sbjct:   14 YCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDRDLVLRGIAI--KKPNSQKITDAMTE--KPVSVEEDASVDEVLHLMASHQLRRIPVTKNKKLTGIVTLGDL 119          
The following BLAST results are available for this feature:
BLAST of CF835566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UMP3_ARATH2.226e-9183.17Uncharacterized protein At5g10860, mitochondrial O... [more]
Y525_METKA5.423e-1332.14Uncharacterized protein MK0525 OS=Methanopyrus kan... [more]
YHCV_BACSU1.578e-1235.85CBS domain-containing protein yhcV OS=Bacillus sub... [more]
Y653_METJA2.061e-1232.74Uncharacterized protein MJ0653 OS=Methanocaldococc... [more]
YBP3_ACIAM2.691e-1236.72Uncharacterized 17.7 kDa protein in bps2 3'region ... [more]
YLBB_BACSU2.976e-1137.84Uncharacterized protein ylbB OS=Bacillus subtilis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01H22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835566 ID=CF835566; Name=CF835566; organism=Citrus sinensis; type=EST; length=710bp
GACGGTCAATTCAATCATTTCTATCCCATGGAAATATCGTCAAATCTGCT
GTTCTGCAACGCATCCGTTTGGTGAATCCGATGCTTAGGCCTGTAGTTTC
TTCGCGGTTTGAGTCGGTTTCATCTGCTCGTATGGAAGAGCATGGTTTCG
AGAGCACAACAATTTCAGACATATTGAAAGCAAAAGGTAAAGGTGCGGAT
GGCTCTTGGCTTTGGTGCACTACTGATGACACTGTCTATGATGCTGTCAA
GTCGATGACACAGCATAACGTTGGAGCGTTGGTCGTCGTCAAACCTGGAG
AGCAAAAGTCTGTTGCTGGGATCATCACAGAGAGAGATTATCTCAGGAAG
ATCATAGTGCAGGGAAGATCATCCAAGTCAACTAAAGTTGGGGACATCAT
GACTGAAGAGAACAAGCTGATCACAGTCTCACCTGACACCAAAGTTCTGC
GGGCAATGCAATTGATGACAGATAACCGTATTCGGCACATTCCGGTAATT
GATGACAAGGGAATGATAGGCATGGTGTCCATTGGAGATGTTGTTCGGGC
TGTGGTGAGTGAGCATCGTGAGGAGTTAAACCGCCTGAATGCTTTTATAC
AAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGTT
TTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTAT
GCATCTCCTG
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