CF835575

Overview
NameCF835575
Unique NameCF835575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835575 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.582e-25
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = -3 
Query:  168 WVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNPMKRXXXXXXXXXIFHTPVQPVNALGAAIAILGTFIYSQ 380
            WV AQS+FYHLYNQVSYMSLDQISPLTFSIGN MKR         IFHTP+QPVNALGAAIAI GTF+YSQ
Sbjct:  315 WVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVASIIIFHTPIQPVNALGAAIAIFGTFLYSQ 385
[Close]
BLAST of CF835575 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.513e-25
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = -3 
Query:  168 WVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNPMKRXXXXXXXXXIFHTPVQPVNALGAAIAILGTFIYSQ 380
            WV AQS+FYHLYNQVSYMSLDQISPLTFS+GN MKR         IF TPVQPVNALGAAIAILGTF+YSQ
Sbjct:  315 WVVAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAILGTFLYSQ 385
[Close]
BLAST of CF835575 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3 
Query:  165 SIFYHLYNQVSYMSLDQISPLTFSIGNPMKRXXXXXXXXXIFHTPVQPVNALGAAIAILGTFIYSQV 365
            ++ +H Y QVSYM L ++SP+T S+GN +KR          F TPV PVNA G  IA+ G F+YS+V
Sbjct:  326 ALCFHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSPVNAFGTGIALAGVFLYSRV 392
The following BLAST results are available for this feature:
BLAST of CF835575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GPT2_ARATH2.582e-2578.87Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
GPT1_ARATH7.513e-2578.87Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
TPT2_BRAOB2.122e-1147.76Triose phosphate/phosphate translocator, non-green... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01I04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835575 ID=CF835575; Name=CF835575; organism=Citrus sinensis; type=EST; length=598bp
TTGAAAGGCTGTTCTGCAGGGCTTTTGTCTCCGTACACCCAAGTGGGCAG
TACAAAGCCAAAAGGAGGAAAAATTTTCTGCCCATTGTAAACCATTTGGT
CCCCAGGGAAAATGTGAACAACAATTTTGAATTTTTCCTACTTGACTAGA
AAGATATGAGAATATACCTGTGAATAGATGAAGGTGCCGAGTATTGCAAT
GGCGGCTCCAAGAGCATTGACGGGTTGAACTGGCGTGTGGAAGATGATGA
TGGAGGAGACTATGACAGAGATTCGCTTCATTGGGTTGCCAATGCTGAAT
GTCAATGGAGAAATTTGATCCAGAGACATGTATGAAACTTGGTTGTACAA
GTGATAGAAGATACTCTGTGCCGCTACCCACCTGTGACAATCCAGAGTCA
CAAATTTATCTTAGAAAAACATTGAGGAAGTTAACGAGTGCTCATTTTGG
GACCACACGACTAAAAATTATTAAAATCTATAATGTTTCAAATCAAAATG
GAACTTTTTCTGATATCCAGCAGACAGGAAGTATCTATTTTCTTCAATTC
TTGAGAAATATCATGCAAATGCATCTAAAAGCAGATAAATCTACCTCC
back to top