CF835576

Overview
NameCF835576
Unique NameCF835576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.006e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 3
Query:   12 VAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIG 239
            VAV HTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRF  GET P+PVY+SLLPIIGGCALAA+TELNFN+ G
Sbjct:  165 VAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFFMGETFPLPVYLSLLPIIGGCALAAITELNFNITG 240          

HSP 2 Score: 120.939 bits (302), Expect = 5.710e-27
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 2
Query:  386 SGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPHMWTAGWQKAIAQIGPNFVWYIL*PRILYELF 649
            +GFMGAMISNLAFVFRNIF             NYYACLSMMSL+ILTPF+IAVE P MW AGWQ A++Q+GPNFVW+++   + Y L+
Sbjct:  239 TGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMMSLVILTPFSIAVEVPQMWAAGWQNAVSQVGPNFVWWVVAQSVFYHLY 326          
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.518e-31
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 3
Query:   12 VAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIG 239
            VAV HTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRF+ GET P  VY+SL+PIIGGCAL+A+TELNFNMIG
Sbjct:  165 VAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFILGETFPTSVYLSLIPIIGGCALSALTELNFNMIG 240          

HSP 2 Score: 118.627 bits (296), Expect = 2.834e-26
Identity = 55/87 (63.22%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  389 GFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPHMWTAGWQKAIAQIGPNFVWYIL*PRILYELF 649
            GFMGAMISNLAFVFRNIF             NYYACLSM+SLLILTPFAIAVEGP MW  GWQ A+A +GP FVW+++   + Y L+
Sbjct:  240 GFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLSLLILTPFAIAVEGPQMWVDGWQTALATVGPQFVWWVVAQSVFYHLY 326          
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    6 VQVAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            + VAV H IGHV + VS + VAVSFTH IK+ EP F+   S+FL G+ +P+ +++SL P++ G A+A++TEL+FN +G I+
Sbjct:  171 IPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNASASQFLLGQPIPITLWLSLAPVVLGVAMASLTELSFNWLGFIS 251          
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 38/81 (46.91%), Postives = 61/81 (75.31%), Query Frame = 3
Query:    6 VQVAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            + VAV H IGHV + VS + VAVSFTH IK+ EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +G I+
Sbjct:  168 IPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFIS 248          
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.923e-16
Identity = 36/81 (44.44%), Postives = 61/81 (75.31%), Query Frame = 3
Query:    6 VQVAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            + VAV H +GHV + VS + VAVSFTH +K+ EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +G I+
Sbjct:  166 IPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFIS 246          
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.735e-16
Identity = 37/81 (45.68%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    6 VQVAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            + VA  H +GHV + VS + VAVSFTH IKS EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +G I+
Sbjct:  172 IPVAFCHALGHVTSNVSFAAVAVSFTHTIKSLEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFIS 252          
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 35/81 (43.21%), Postives = 59/81 (72.84%), Query Frame = 3
Query:    6 VQVAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            + V   H +GHV + VS + VAVSFTH IK+ EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +G I+
Sbjct:  171 IPVGFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPISLWLSLAPVVIGVSMASLTELSFNWLGFIS 251          
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   12 VAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEINCSKCG-*NDSDYILKKK 296
            +AVVHT+G++   +S+ KV+VSFTH IK+ EP FSV++S    GE     V  S++PI+GG ALA+VTE++FN  G ++       N S  +L KK
Sbjct:  170 LAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVVLSAMFLGEVPTPWVIGSIIPIVGGVALASVTEVSFNWAGFLSAMASNLTNQSRNVLSKK 265          
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 3
Query:   12 VAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGEIN 248
            VA+ H IGH+ + VS + VAVSF H IK+ EP FS   ++F+ G+ +P  +++SL P++ G ++A++TEL+FN  G IN
Sbjct:  176 VALCHGIGHITSNVSFAAVAVSFAHTIKALEPFFSAAATQFILGQQVPFSLWLSLAPVVIGVSMASLTELSFNWTGFIN 254          
BLAST of CF835576 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.250e-14
Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   12 VAVVHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIG 239
            VA  H +GHV + VS + V VSFTH +K+ EP F+   S+F+ G+ +P+ +++SL P++ G ++A++TEL+FN +G
Sbjct:  180 VAFCHALGHVTSNVSFAAVRVSFTHTVKALEPFFNAAASQFILGQQIPLALWLSLAPVVLGVSMASLTELSFNWLG 255          
The following BLAST results are available for this feature:
BLAST of CF835576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GPT2_ARATH1.006e-3188.16Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
GPT1_ARATH6.518e-3186.84Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
TPT1_BRAOB1.559e-1649.38Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SPIOL3.472e-1646.91Triose phosphate/phosphate translocator, chloropla... [more]
TPT_PEA5.923e-1644.44Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR7.735e-1645.68Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR6.548e-1543.21Triose phosphate/phosphate translocator, chloropla... [more]
TPT2_BRAOB1.117e-1445.83Triose phosphate/phosphate translocator, non-green... [more]
TPT_MAIZE1.459e-1445.57Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU3.250e-1443.42Triose phosphate/phosphate translocator, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835576 ID=CF835576; Name=CF835576; organism=Citrus sinensis; type=EST; length=656bp
TTGCCGTGCAGGTTGCAGTGGTACATACAATTGGGCATGTAGCAGCAACC
GTAAGTATGTCAAAAGTTGCAGTTTCATTCACTCACATCATCAAGAGTGG
TGAGCCTGCATTCAGTGTATTGGTTTCAAGGTTCTTGTTCGGTGAGACAC
TTCCCATGCCGGTTTATATGTCACTCCTGCCGATTATTGGAGGCTGTGCC
CTTGCTGCTGTTACAGAGCTCAACTTCAACATGATTGGTGAGATAAACTG
TTCTAAATGTGGTTGAAATGATTCTGATTACATATTAAAAAAAAAATTCC
CTTTTCTTCGGATGAATACTTGAAAATATTTCATGCTTAGTGATGGTGTT
GCTGGTTTTGATTGTTGAATTTGCTGACGGGGTTTTCAGGATTTATGGGA
GCTATGATATCGAATTTGGCATTCGTGTTTCGGAACATTTTCTCCAAGAA
AGGGATGAAGGGAAAGTCTGTTGGTGGGATGAACTATTATGCTTGTTTGT
CTATGATGTCTCTTTTGATTCTCACACCATTTGCAATTGCTGTGGAGGGC
CCTCATATGTGGACTGCTGGCTGGCAAAAGGCTATTGCTCAAATTGGTCC
CAACTTCGTGTGGTATATACTATGACCTCGTATTTTATATGAACTCTTTT
TTCTAC
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