CF835579

Overview
NameCF835579
Unique NameCF835579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1114 contig Csv1_Contig1114:59..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835579 vs. ExPASy Swiss-Prot
Match: YUID_BACSU (Uncharacterized membrane protein yuiD OS=Bacillus subtilis GN=yuiD PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 49/135 (36.30%), Postives = 79/135 (58.52%), Query Frame = -1 
Query:  306 AQFLKIFTTWYKEKRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVC----------EFPPDHPLFSVRPLRELLGHTPLQVVAGGILGCVVAFLM 680
            AQ +K+   +   ++ D   +  +GGMPSSHSA V+AL+  + L+ G  S  FA++ + A I M+DA+GVR HAG QA ++N++V           +FP        + L+ELLGH P++V  GG+ G ++  ++
Sbjct:   19 AQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTLVL 153
The following BLAST results are available for this feature:
BLAST of CF835579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YUID_BACSU3.562e-1936.30Uncharacterized membrane protein yuiD OS=Bacillus ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01I06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835579 ID=CF835579; Name=CF835579; organism=Citrus sinensis; type=EST; length=680bp
TTTTTTTTTTTTTTTTTCGAAAGGAAGAAGTGACGTTTATTACCCTTCAG
AGGTTTTAAGTGACGTTTATTAACAGAGGTTTCCTTTTTACAAAATGAAG
TTCTAGGTTAACAAAAAAACATAGTCATCCAGTCTCCAAATAAACCCCAA
AATCACTACAGAATAACGACTGAATACATTATACATCTGTTTAGGTCACT
TGTATCTCCCAGCCGAGCTGCTGCCTATATCTACCAGGTTATCGGCCAAT
TGGAGACGAAACAAATAATCAATGTTGATCTTGTAATGATCTAGTTCGAG
TTTCTCATCAGAAACGCTACAACGCATCCCAAAATACCACCGGCCACAAC
CTGTAACGGGGTATGACCAAGTAATTCACGTAGAGGTCTAACGCTAAACA
ATGGGTGGTCTGGAGGAAACTCACATACTATTTGATTCAGCAATTCAGCT
TGCCGACCAGCATGTAGTCTGACCCCAGAGGCATCATACATTACAATGCA
AGCCAAGACCACTGCAATGGCAAAAGATGGACTTCCTGACCCTTCTTGCA
GACCAATAGCTACTGCTAGAGCCGACACAGTAGCAGAATGTGACGAAGGC
ATTCCACCAGAGTCAAGCATCTTTTTAGAATCCCATCTCTTTTCTTTATA
CCAAGTGGTGAAGATCTTGAGGAATTGAGC
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