CF835585
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 267.7 bits (683), Expect = 5.173e-71 Identity = 137/187 (73.26%), Postives = 153/187 (81.82%), Query Frame = -1 Query: 226 QAEVQPVARAPGNGQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 786 QAE+ PVA+AP G+ A + + GPNANPL+LFPQG+P +GA GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV+ GE N+ +QL MPQ++ VTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED Sbjct: 193 QAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGA-GAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 260.381 bits (664), Expect = 8.258e-69 Identity = 143/192 (74.48%), Postives = 156/192 (81.25%), Query Frame = -1 Query: 226 QAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--EGNLGDQLAGLM--PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 786 QAEV PVAR P + GQ AN +SGPNANPLDLFPQGLP+VG G GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+GG GNL Q+A M PQ+IQVT EEREAIERLEAMGF+RA+VLEVFFACNKNEELAANYLLDHMHEFE+ Sbjct: 232 QAEVPPVARPPASAGQPANPPAQTQQPAAAP---ASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 222.631 bits (566), Expect = 1.908e-57 Identity = 110/155 (70.97%), Postives = 133/155 (85.81%), Query Frame = -1 Query: 226 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 687 SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+LQELGKQNPQ+++LIQE+QA+FL LINEP +G E NL DQ MPQ+I VTPEE EAI RLEAMGFDRA+VL+VFFACNK+E+LAANYLLDHM+EF+D Sbjct: 234 SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 200.29 bits (508), Expect = 1.014e-50 Identity = 100/156 (64.10%), Postives = 127/156 (81.41%), Query Frame = -1 Query: 226 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 687 S GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEAMGFDRA+V+E F AC++NEELAANYLL++ +FED Sbjct: 217 SGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 199.904 bits (507), Expect = 1.325e-50 Identity = 102/158 (64.56%), Postives = 129/158 (81.65%), Query Frame = -1 Query: 226 SSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 687 S GPN++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G +G++ DQ MP S+ VTPEE+E+IERLEAMGFDRAIV+E F +C++NEELAANYLL+H +FED Sbjct: 214 SGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.834e-31 Identity = 65/134 (48.51%), Postives = 95/134 (70.90%), Query Frame = -1 Query: 250 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 621 ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL Sbjct: 270 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.926e-31 Identity = 65/134 (48.51%), Postives = 94/134 (70.15%), Query Frame = -1 Query: 250 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 621 ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ GG G + + G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL Sbjct: 269 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30 Identity = 65/139 (46.76%), Postives = 94/139 (67.63%), Query Frame = -1 Query: 250 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 618 +G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 9.869e-30 Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = -1 Query: 250 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ-----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 618 +G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.289e-29 Identity = 65/140 (46.43%), Postives = 96/140 (68.57%), Query Frame = -1 Query: 229 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 621 AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL + E Sbjct: 226 AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363 The following BLAST results are available for this feature:
BLAST of CF835585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835585 ID=CF835585; Name=CF835585; organism=Citrus sinensis; type=EST; length=786bpback to top |