CF835596

Overview
NameCF835596
Unique NameCF835596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:22..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.464e-84
Identity = 160/180 (88.89%), Postives = 161/180 (89.44%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 598
            MASE KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct:    1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 9.364e-84
Identity = 157/180 (87.22%), Postives = 162/180 (90.00%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 598
            MASE KLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 9.364e-84
Identity = 157/180 (87.22%), Postives = 162/180 (90.00%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 598
            MASE KLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.550e-81
Identity = 153/178 (85.96%), Postives = 159/178 (89.33%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQ 592
            MASE K SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.550e-81
Identity = 153/178 (85.96%), Postives = 159/178 (89.33%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQ 592
            MASE K SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.522e-62
Identity = 119/167 (71.26%), Postives = 133/167 (79.64%), Query Frame = 2
Query:   83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILN 583
            NPMR++ ++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   QHR+TKEDAMKWFQ KY+G+ILN
Sbjct:   15 NPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.007e-61
Identity = 115/171 (67.25%), Postives = 134/171 (78.36%), Query Frame = 2
Query:   74 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 586
            K  NPM+E+++ KLVLNIS+GESGDRLTRAAKVLEQLSGQTPVFSKARYT+R FGIRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIKYDPS GIYGMDF+VV++                   H++  ED + WF+ KY+ V+L K
Sbjct:    4 KAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVLGK 174          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.007e-61
Identity = 116/171 (67.84%), Postives = 137/171 (80.12%), Query Frame = 2
Query:   68 ENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 580
            + +  NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   +HR++KE+AM+WFQ KY+G+IL
Sbjct:    5 QGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL11_PONAB (60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 1.007e-61
Identity = 116/171 (67.84%), Postives = 137/171 (80.12%), Query Frame = 2
Query:   68 ENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 580
            + +  NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   +HR++KE+AM+WFQ KY+G+IL
Sbjct:    5 QGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSITDKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL11_MOUSE (60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4)

HSP 1 Score: 236.498 bits (602), Expect = 1.007e-61
Identity = 116/171 (67.84%), Postives = 137/171 (80.12%), Query Frame = 2
Query:   68 ENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 580
            + +  NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   +HR++KE+AM+WFQ KY+G+IL
Sbjct:    5 QGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
The following BLAST results are available for this feature:
BLAST of CF835596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RL11_MEDSA2.464e-8488.8960S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL112_ARATH9.364e-8487.2260S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH9.364e-8487.2260S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_ORYSJ2.550e-8185.9660S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI2.550e-8185.9660S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_DROME4.522e-6271.2660S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_SCHPO1.007e-6167.2560S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_RAT1.007e-6167.8460S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]
RL11_PONAB1.007e-6167.8460S ribosomal protein L11 OS=Pongo abelii GN=RPL11... [more]
RL11_MOUSE1.007e-6167.8460S ribosomal protein L11 OS=Mus musculus GN=Rpl11... [more]

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Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Properties
Property NameValue
Genbank descriptionUCRCS03_01I15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835596 ID=CF835596|Name=CF835596|organism=Citrus sinensis|type=EST|length=685bp
CCGTCTCCGTCCTCTTATATACTGAGCAGCGGCAGTAACTCATCATCAGC
AACCTTTAATGGCTTCAGAGAATAAACTTTCGAACCCCATGAGGGAAATT
AAGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTGGAGATCG
TCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAGACACCTG
TTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAGACGTAAT
GAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCT
TTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGTCGAAATT
TCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTT
GGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATTTCTTTGT
GGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGCCGCCGTAGGTGCAAGT
CTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAATGAAATGG
TTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGAATATTGG
TGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGTTGATGTT
TGTAGACACTGGCTATTACTTGGCGTTTTGCAAAC
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