CF835598

Overview
NameCF835598
Unique NameCF835598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835598 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 90/247 (36.44%), Postives = 129/247 (52.23%), Query Frame = 2
Query:    2 FGVDHFDATTD-EGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVD-NNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHL---GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKI 727
            FG D  D   + +  + + SFF WYY               YIQ+ + W IGFG+P VLM+ A +LF++   LYV      S+F+G+ Q +VAAYKKR+L+LP    DHH  F           K P + + RFLNKA +I +   E+  DG  +N WRLC+  +VEE+K L               + S Q +F + QA  M+R L   G  FQ+P G+ G+ ++I + LW+  YD  ++P   KI
Sbjct:  165 FGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLP----DHHDSFDCYYHMKDSEIKAP-SQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTS-QSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKI 405          
BLAST of CF835598 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.456e-32
Identity = 83/247 (33.60%), Postives = 124/247 (50.20%), Query Frame = 2
Query:    2 FGVDHFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIF--YDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKH 736
            FG D FD   +      +SFFNW+Y               +IQ +V W  GFG+PTV M+ A+  F  G + Y L  P GS  + I QV+VAA++K  + +P+   D   +F   D    +    KL  T   +F +KAA+   ++ +K DG  VN WRLCS+ QVEE+K +              T  SQ  T  V Q   M++H+G  F+IP  ++ +   +++  W P YD  ++P  RK T++
Sbjct:  163 FGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPE---DKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK-DG-EVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRN 404          
BLAST of CF835598 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.586e-31
Identity = 77/248 (31.05%), Postives = 121/248 (48.79%), Query Frame = 2
Query:    2 FGVDHFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFY---DPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKH 736
            FG D FD T ++  +  +SFFNW+Y               +IQ +V W  G G+PTV M  A++ F  G   Y L +P GS  + + QV+VA+ +K ++ +P+ +     + Y   D    +    KL  T    F +KAA  V+           + W+LC++ QVEE+K L              +  SQ GT  V Q   +++H+GP F+IP  ++ +   +++  W P YD ++VP  RK T H
Sbjct:  163 FGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDE----SLLYENQDAESSIIGSRKLEHTKILTFFDKAA--VETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGH 404          
BLAST of CF835598 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 82/246 (33.33%), Postives = 118/246 (47.97%), Query Frame = 2
Query:    2 FGVDHFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLS---KLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKIT 730
            FG D FD T         SFFNW+Y               +IQ++  W +GFGIPTV M  AI  F  G  LY   +P GS  + I QV+VA+++K  + +P+       + Y+   K   ++   K+  T   ++L+KAA+I  + E    G   N WRLC++ QVEE+K L                 +Q  T  V Q   MN  +G  FQ+PP  +G     ++ +W+P YD  +VP  RK T
Sbjct:  181 FGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDAT----LLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVI--SEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFT 419          
BLAST of CF835598 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22
Identity = 71/245 (28.98%), Postives = 116/245 (47.35%), Query Frame = 2
Query:    5 GVDHFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSK---LPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKIT 730
            G D FD    +     +SFFNW+                Y+QD+V W IG+G+ T+ +  +I +FL+G +LY    P GS F+ + +V+VA+ +K R  +          FY+ PP  +   +   +  T   RFLN+A+       LK   T  ++WRLC+I +VEE K +                ++Q  T  + Q   ++R L   F IPP ++   +  ++ + +  YD V V  +RK+T
Sbjct:  171 GADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTR----FYELPPMEYASKRAFPIHSTSSLRFLNRAS-------LKTGST--HKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLT 402          
BLAST of CF835598 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.112e-19
Identity = 63/244 (25.82%), Postives = 107/244 (43.85%), Query Frame = 2
Query:    5 GVDHFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPL--THQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKIT 730
            G D FD    +      SFFNW+                Y+QD+V W +G+G+PT+ +  +I +FL+G   Y    P GS F+ + +V+VA+++K    +       H +   P  +       P+  T   RFL++A++    N         ++W LC+  +VEE K +                ++Q  T  V Q   ++R +   F IPP ++     +++ + +  YD V V   RK T
Sbjct:  171 GADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHEL---PSLEYERKGAFPIHPTPSLRFLDRASLKTGTN---------HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFT 402          
BLAST of CF835598 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 68/244 (27.87%), Postives = 110/244 (45.08%), Query Frame = 2
Query:    2 FGVDHFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGI--FYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKI 727
            FG D FD T  +    +  FFN ++               Y+QD V    G+GI    ++ A+ +FL G   Y   +  GS  + +  V+VAA++ R+L LP      + +         +    KLP T QFR L+KAA  + + E        N+W L ++  VEEVK +              T  +Q  T +V+Q+  ++R +G  F+IPP ++ V  +  + L    YD V +   +K+
Sbjct:  170 FGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAA--IRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIG-SFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKL 410          
The following BLAST results are available for this feature:
BLAST of CF835598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PTR2X_ARATH1.191e-3436.44Probable peptide transporter At1g52190 OS=Arabidop... [more]
PTR1_ARATH1.456e-3233.60Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH3.586e-3131.05Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH3.035e-3033.33Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH2.330e-2228.98Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR3A_ARATH4.112e-1925.82Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
CHL1_ARATH1.728e-1727.87Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01I16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835598 ID=CF835598; Name=CF835598; organism=Citrus sinensis; type=EST; length=736bp
GTTTGGGGTCGATCATTTTGATGCAACTACTGATGAAGGAGTCAAAGGAA
TCAACAGCTTCTTTAACTGGTATTACACCACATTTACGGTGGTCATATTG
ATCACTCAAACGGTGTTGGTTTATATACAAGACTCAGTGAGCTGGGTGAT
CGGATTTGGAATTCCAACGGTGTTGATGATAGGTGCAATTATTCTATTTC
TTGTTGGAAAAAAACTTTATGTGCTTGTTGAACCGGAAGGCAGTATCTTT
TCTGGGATTGGCCAAGTGCTCGTTGCAGCTTACAAGAAACGCCGGCTTAC
GCTTCCACAAGGACAAATGGATCACCATGGGATTTTCTACGATCCTCCCC
CAAAGCTCTTTGTTTTATCAAAGCTACCTCTCACCCACCAGTTCAGATTC
CTAAACAAAGCTGCAATGATAGTGGACAATAATGAGCTTAAGCCTGATGG
AACTCCCGTCAACCAGTGGAGGCTCTGTAGCATCCAACAAGTGGAAGAGG
TTAAGTGCCTGATCAAAATCATCCCAATATGGGCAGCTGGAATCATTAGC
TTGACTTCCATATCACAACAAGGAACATTCACAGTTTCACAGGCCATGAA
AATGAACAGACACCTTGGGCCTAAGTTCCAAATCCCTCCAGGTACAGTGG
GGGTCATATCAATGATCACAATAGGACTCTGGCTCCCATTTTATGACACA
GTTCTTGTCCCAGCTCTTCGCAAAATCACTAAACAT
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