CF835603

Overview
NameCF835603
Unique NameCF835603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:358..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835603 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = -2 
Query:  426 PLAVKEGGEAESSSGKFQRSLSMPASPGAXXXXXXXXXXLSARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 704
            PL +K+ GE+          ++MP +P             SARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   30 PLNLKDEGESSK--------ITMPTTPTTPVTPTTPI---SARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CF835603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN5.982e-2053.76Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01I21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835603 ID=CF835603; Name=CF835603; organism=Citrus sinensis; type=EST; length=711bp
TTTTTTTTTTTTTTTTTCGAGAAGCAACTTATTTATTAATACTATAACAT
ATATGCTCATCACGACCGTCCACGAAGGGATCATCTTGGCTCTTACAAAA
TGACAATCAAAAACATGTCCTAAACCCAAAAACCAGCAACCTTTCATCTC
CGCCCACAGCTTAGCAATCCTCACATCACATACAATTATTAAATTATATG
ATATAAAAACATCACAGTCTTTAGTTTACTTTTAGTCAGCAGCATTTTAA
AACCAAACTTTAGATAGGAAGGACACGTAATACAAATAGCATTAACAAAA
CGACAAGGACACGTTGCGAAATCCAAAACGAAACGACACTATCTACAGAC
TACAGGCAACTCATCCGGTGAGTTGGTGACCCATCACATTCATTTACATC
GCTGGAGCGTATCATCCACTCAGTGATGATGCTTGCTCCTAGTCTCCCCA
CTGTAAAGCCAGTCATAAACAGTGGGAGAGTTAGGATGTGTGGGCTTGTC
AAAGACCTCTGCACCGATACCCCTAGTAGCAAGGTTGCTACCGGGGTGAA
ACACGCTCCTCCACACGTTGTCCTTACGCGCCGACAGCGGCGTCGTCGGC
GTCACTGGCGTCAACGGTGCCCCTGGACTCGCTGGCATTGACAGAGACCT
CTGGAACTTGCCCGACGACGACTCCGCCTCACCACCCTCTTTGACTGCTA
AGGGTGTTGTG
back to top