CF835604

Overview
NameCF835604
Unique NameCF835604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835604_ssr205 microsatellite CF835604_ssr205:205..219. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10458 contig Csv1_Contig10458:685..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835604 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.486e-27
Identity = 74/161 (45.96%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:   90 VSVITNTNSEWSETIQNLIT----------FSPKQTVSSIRPLXXXXXXXXXXXXXXXXXXXXXXXXKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFLAANLAI 542
            VSVITN+NS+W   IQNL+T          FSP  + SS  P                         +QTV+E ATA++EGK ++A+EIL R+SQ  N + NSE++L++ M +AL+SR+       PV EL+GKEH  STQLLY+ SPCF LGF AANLAI
Sbjct:  216 VSVITNSNSDW---IQNLVTPNPNPNPVLSFSPSSSSSSSSP--------------STASTTTSVCSRQTVMEIATAIAEGKTEIATEILARVSQTPNLERNSEEKLVDFMVAALRSRI-----ASPVTELYGKEHLISTQLLYELSPCFKLGFEAANLAI 354
The following BLAST results are available for this feature:
BLAST of CF835604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SCL8_ARATH6.486e-2745.96Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01I21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835604 ID=CF835604; Name=CF835604; organism=Citrus sinensis; type=EST; length=542bp
TTCAAGGACAGGAATCAGAGAAGAAGATGCTGAATCGTCTGCAGGAACTG
GAGAAACAGTTGTTAGACGATGAGGAGGAAGGCGATGACGTGTCAGTTAT
AACGAATACAAACAGCGAGTGGTCAGAAACCATACAAAATCTCATAACTT
TCAGTCCGAAACAGACGGTCTCGTCGATACGTCCGCTCGCCCCATCACCT
ACTACGTCGTCGTCGTCGTGCTCATCGTCATCGGTGGCTTCGCCGGCTAC
GAGCTGTTCGAAACAGACGGTTATCGAAGCAGCAACGGCGGTTTCGGAGG
GAAAATACGACGTCGCCTCCGAGATCTTGACGCGGCTGAGCCAGGCGACG
AATTCGAAAGGGAATTCGGAACAGAGGTTGATGGAGCACATGTGTTCAGC
GTTGAAGTCGCGCGTGAACCCACACGAGAACCCGCCGCCTGTCGCTGAGT
TGTTCGGCAAAGAACACGCCGAGTCGACTCAGTTGCTTTACGATTTCTCC
CCGTGTTTCAGCCTGGGCTTCCTGGCTGCTAATCTCGCCATT
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