CF835606

Overview
NameCF835606
Unique NameCF835606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835606_ssr124 microsatellite CF835606_ssr124:124..135. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835606_ssr104 microsatellite CF835606_ssr104:104..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1610 contig Csv1_Contig1610:424..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.262e-62
Identity = 109/134 (81.34%), Postives = 123/134 (91.79%), Query Frame = -2
Query:  221 PPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNS--RVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 616
            PPATLAEITLG + DFYDVSLVDGYN+AMSI+P++GSG+CSYAGCVSDLN MCP GLQVRS +  RVVACKSAC AFNSP+YCCTG FGNPQSCKPTAYS+IFK ACP+AYSYAYDDPTSIATC+ +NY++TFC
Sbjct:  105 PPATLAEITLGPELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYIVTFC 238          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 85/134 (63.43%), Postives = 97/134 (72.39%), Query Frame = -2
Query:  221 PPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 616
            PP TLAE TL     +DFYDVSLVDGYN+ + I P  GSG C YAGCVSDLN  CP  L+V   + VVACKSAC  FN+ +YCC G+   P++C PT YSRIFK ACP AYSYAYDD TS  TCTG+NY +TFC
Sbjct:  105 PPVTLAEFTLVGDGGKDFYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMDQNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGANYEITFC 238          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.040e-40
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = -2
Query:  221 PPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG-SNYLLTFC 616
            PPATL EIT+     QDFYDVSLVDG+N+ MS+ P  G+GKC  + C +D+N +CPA LQV+ S+  V+ACKSAC AFN P+YCCT     P++C P  YS++FK  CP+AYSYAYDD +S  TC+G   YL+TFC
Sbjct:  110 PPATLVEITIASNGGQDFYDVSLVDGFNLPMSVAPQGGTGKCKASTCPADINKVCPAPLQVKGSDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFC 245          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.271e-38
Identity = 75/136 (55.15%), Postives = 100/136 (73.53%), Query Frame = -2
Query:  221 PPATLAEITLGQQQ--DFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 616
            PPA+L EI +   +  DFYDVSLVDGYN+ +S+    G+G C    C +++N +CPA LQV+ S++ V+ACKSAC AFN P+YCCTG+F   ++C  T YSRIFK  CP+AYSYAYDD TS  TC+G+ +Y++TFC
Sbjct:  107 PPASLVEINIAANRGMDFYDVSLVDGYNLPVSVATRGGTGDCKATSCRANVNAVCPAELQVKGSDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFC 242          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.660e-38
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = -2
Query:  221 PPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 616
            PPA+L E+TL     QDFYDVSLVDG+N+ + + P  GSG C+   C +++N +CPA L  + S+  V+ CKSAC A N P+YCCTG++G P +C PT +S++FK  CP+AYSYAYDD +S  TC G  NY +TFC
Sbjct:  108 PPASLVELTLATNGGQDFYDVSLVDGFNLPIKLAPRGGSGDCNSTSCAANINTVCPAELSDKGSDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFC 243          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.397e-37
Identity = 71/136 (52.21%), Postives = 97/136 (71.32%), Query Frame = -2
Query:  221 PPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRS-NSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 616
            PPATL EIT+     QD+YDVSLVDG+N+ MS+ P  G+G+C  + C +++N+ CPA LQV++ +  V++CKSAC AF   +YCCT     P++C PT YS IF+  CP+AYSYAYDD  S  TC+G  +Y++TFC
Sbjct:   76 PPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 211          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.131e-37
Identity = 71/136 (52.21%), Postives = 97/136 (71.32%), Query Frame = -2
Query:  221 PPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRS-NSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 616
            PPATL EIT+     QD+YDVSLVDG+N+ MS+ P  G+G+C  + C +++N +CPA LQV++ +  V++CKSAC AF   +YCCT     P++C PT YS IF+  CP+AYSYAYDD  S  TC+G  +Y++TFC
Sbjct:  110 PPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 245          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.650e-36
Identity = 74/136 (54.41%), Postives = 91/136 (66.91%), Query Frame = -2
Query:  221 PPATLAEITL--GQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 616
            PPATLAE  +  G  QDFYDVSLVDG+N+ MS+ P  G+G C  A C +++N +CP+ LQ + S+  VVAC SAC  F +P+YCCT     P++C PT YS IF  ACP AYSYAYDD     TC G  NY +TFC
Sbjct:  109 PPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 244          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.461e-36
Identity = 69/135 (51.11%), Postives = 89/135 (65.93%), Query Frame = -2
Query:  221 PATLAEITLGQQQD---FYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNS-RVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 613
            PAT+ E+TLG       FYDVSLVDG+N  +S+  + G   C  A C +D+N+ CP+ L+VR    RV  C+SAC A    RYCCTG + +P +C+PT +S +FKA CPRAYSYAYDD TS+  C    YL+TFC
Sbjct:  114 PATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRDREGRVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYLITFC 248          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.461e-36
Identity = 73/136 (53.68%), Postives = 92/136 (67.65%), Query Frame = -2
Query:  221 PPATLAEITL--GQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQ-VRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 616
            PPATLAE T+  G  QDFYDVSLVDG+N+ MS+ P  G+G C    C +++NL+CP+ LQ + S+  VVAC SAC  F  P+YCCT      + C PT YS+IF   CP AYSYA+DD   + TC+G  NYL+TFC
Sbjct:  106 PPATLAEFTIAAGGGQDFYDVSLVDGFNLPMSVTPQGGTGTCKMGSCAANVNLVCPSELQKIGSDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFC 241          
The following BLAST results are available for this feature:
BLAST of CF835606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TLPH_ARATH1.262e-6281.34Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
PR5_ARATH1.550e-4463.43Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_PRUPE1.040e-4057.35Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP1_CASSA1.271e-3855.15Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLP1_PYRPY1.660e-3852.94Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TP1B_MALDO2.397e-3752.21Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TP1A_MALDO3.131e-3752.21Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP_PRUAV2.650e-3654.41Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TLPH_ORYSJ3.461e-3651.11Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP2_PRUPE3.461e-3653.68Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835606 ID=CF835606; Name=CF835606; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTATACTTTATAATTTCCATTAACTAATAATAATGGCCAATTC
AACCTTATCATCTGATACCAACAAACTACCGTACCATGATATTATTACTA
GTAAACATAACATAACATATGATATAATAATAATAATCTTATCTATTACA
AATGAACTTGATAGCGTATGTAGTAGTAGTGGTAGATAATGGGTATAAAA
ATCTAACGGCGATGGCGGGGGCAGAAAGTGAGCAAGTAGTTGCTGCCGGT
GCAAGTAGCAATACTAGTGGGATCATCATAAGCATAGCTGTAAGCTCTGG
GACAAGCGGCCTTGAAAATCCTGGAGTAAGCAGTGGGCTTGCAGGATTGA
GGATTCCCAAAGCTCCCAGTGCAGCAATACCTGGGCGAGTTGAAAGCGAA
ACAAGCACTTTTGCAGGCCACCACTCTGCTGTTGGACCTCACTTGTAGCC
CCGCGGGACACATCAAGTTCAGGTCACTCACACACCCAGCGTAGCTGCAT
TTCCCGGAGCCTCTGATGGGCAAAATCGACATTGCGATGTTGTAACCGTC
GACCAGGCTCACGTCGTAGAAGTCCTGCTGCTGCCCCAGCGTGATTTCGG
CGAGGGTGGCCGGCGGG
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