CF835613

Overview
NameCF835613
Unique NameCF835613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1302 contig Csv1_Contig1302:176..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835613 vs. ExPASy Swiss-Prot
Match: LFS_ALLCE (Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 37/131 (28.24%), Postives = 67/131 (51.15%), Query Frame = -3 
Query:  217 KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTV--APKENGCYIEWKYEVEPVKG 603
            KW G+    L   K EQ W  L+DF  L K  P+L+ C  ++G +   GCVR+  G   P++ +         W K+KL+A++ + M+ +Y   +   G+  Y +T+ +   P+  G   +W ++ + ++G
Sbjct:   20 KWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEE--------FWAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIVEGPEHKGSRFDWSFQCKYIEG 142
The following BLAST results are available for this feature:
BLAST of CF835613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LFS_ALLCE2.665e-1428.24Lachrymatory-factor synthase OS=Allium cepa GN=LFS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01J07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835613 ID=CF835613; Name=CF835613; organism=Citrus sinensis; type=EST; length=683bp
AATATTATCCCTTCATTATTCATCACTTAAAACCTAGCCAACACAAACAA
CATAATAAGAACAACCCTAAACAAAAACAGCAATAACAAATTCATGGATT
CATGAACTACTAGAGTAGTGCATAATGACTTCATAAGCTTGAAGAGCTTC
TTTCATTCTCCTAGCCATAACTTGCAAGCCACTGCTAATAAAACAATCCA
AATCCTCAAGTCTCCATCCTTTGACAGGCTCAACTTCATACTTCCACTCA
ATGTAACACCCATTCTCCTTAGGCGCCACTGTCAGTGTCGATACATATCC
ATAGAAACCAACATTTCCATCTACTATGGAATAGGTTAAAGTCATTTCCT
CTGCATTGATGGCTAGCAATTTTTGCTTAGTCCAGTTCACACTTTGCTCA
TGATCGTCATCTTTATTATCGACCGGAGTTTTGAATCCGGCGCAAAAACG
CACGCAGCCGGGCTGCCCAGAAATGCCTTGAATAGGGATGCATGTTGTTA
GAGTTGGAAACCACTTGTCTAAGCCGAAGAAATCTTCCAAGAAAGCCCAT
ATCTGTTCAGCTTTCACGCCTGTTAGCTCTTCACAAGCCCTGCCTTGCCA
TTTTGGTTGCTCTTGCTTCCCATGATGATCATCATTATCAGCCATTCGGT
TTAGCTGGCGCCTAGTTATAATCTTGGAAATTC
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