CF835618
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.129e-14 Identity = 50/157 (31.85%), Postives = 86/157 (54.78%), Query Frame = 3 Query: 195 RRQIAAKVLSSL--PTSRSNSAVSNEKAPKWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659 R+ KV ++ P + + V +++ +AIK + + EAR+L H GTE IL+G++ EGT +AAKVL++ G+ L R E KI+G+G F P T A+RV++ +++ + G++ + + LLLG+ E + ++L LG Sbjct: 15 RQSFGGKVRQAMNVPKGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 168
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.973e-13 Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 3 Query: 276 KWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659 +++ +AIK + + EAR+L H GTE IL+G++ EGT +AAKVL++ G+ L R E KI+G+G F P T A+RV++ +++ + G++ + + LLLG+ E + ++L LG Sbjct: 96 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFI--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 220
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.188e-13 Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 3 Query: 276 KWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659 +++ +AIK + + EAR+L H GTE IL+G++ EGT +AAKVL++ G+ L R E KI+G+G F P T A+RV++ +++ + G++ + + LLLG+ E + ++L LG Sbjct: 94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 218
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-13 Identity = 46/141 (32.62%), Postives = 79/141 (56.03%), Query Frame = 3 Query: 237 SRSNSAVSNEKAPKWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659 +R+ + +++ +AIK + + EAR+L H GTE IL+G++ EGT +AAKVL++ G+ L R E KI+G+G F P T A+RV++ + + + G++ + + LLLG+ E + ++L LG Sbjct: 81 ARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV--AVEIPFTPRAKRVLELSQEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 218
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.156e-12 Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 3 Query: 276 KWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659 +++ +A+K + + EAR+L H GTE IL+GIL EGT LAAK L++ G+TL R E KI+G+G F P T A+++++ A++ + V LLLG+ E + ++L LG Sbjct: 35 RFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKIIGRGSGFV--AIEIPFTPRAKKILELAIEES-RILTHNYVGTEHLLLGLIKEGEGVAARVLENLG 159
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12 Identity = 46/135 (34.07%), Postives = 76/135 (56.30%), Query Frame = 3 Query: 276 KWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 680 +++ +AIK + + EAR+L H GTE IL+G++ EGT +AAKVL++ GV L R E KI+G+G F P T A+RV++ +++ + G++ + LLLG+ E + ++L L K + Sbjct: 4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGTEHLLLGLIREGEGVAARVLENLALDLTKVR 135 The following BLAST results are available for this feature:
BLAST of CF835618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835618 ID=CF835618; Name=CF835618; organism=Citrus sinensis; type=EST; length=813bpback to top |