CF835618

Overview
NameCF835618
Unique NameCF835618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.129e-14
Identity = 50/157 (31.85%), Postives = 86/157 (54.78%), Query Frame = 3
Query:  195 RRQIAAKVLSSL--PTSRSNSAVSNEKAPKWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659
            R+    KV  ++  P  + +  V      +++ +AIK   + + EAR+L H   GTE IL+G++ EGT +AAKVL++ G+ L   R E  KI+G+G  F       P T  A+RV++ +++   + G++  + +  LLLG+  E +    ++L  LG
Sbjct:   15 RQSFGGKVRQAMNVPKGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 168          
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.973e-13
Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  276 KWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659
            +++ +AIK   + + EAR+L H   GTE IL+G++ EGT +AAKVL++ G+ L   R E  KI+G+G  F       P T  A+RV++ +++   + G++  + +  LLLG+  E +    ++L  LG
Sbjct:   96 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFI--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 220          
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.188e-13
Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  276 KWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659
            +++ +AIK   + + EAR+L H   GTE IL+G++ EGT +AAKVL++ G+ L   R E  KI+G+G  F       P T  A+RV++ +++   + G++  + +  LLLG+  E +    ++L  LG
Sbjct:   94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 218          
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-13
Identity = 46/141 (32.62%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  237 SRSNSAVSNEKAPKWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659
            +R+   +      +++ +AIK   + + EAR+L H   GTE IL+G++ EGT +AAKVL++ G+ L   R E  KI+G+G  F       P T  A+RV++ + +   + G++  + +  LLLG+  E +    ++L  LG
Sbjct:   81 ARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFV--AVEIPFTPRAKRVLELSQEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 218          
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.156e-12
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  276 KWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALG 659
            +++ +A+K   + + EAR+L H   GTE IL+GIL EGT LAAK L++ G+TL   R E  KI+G+G  F       P T  A+++++ A++   +      V    LLLG+  E +    ++L  LG
Sbjct:   35 RFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKIIGRGSGFV--AIEIPFTPRAKKILELAIEES-RILTHNYVGTEHLLLGLIKEGEGVAARVLENLG 159          
BLAST of CF835618 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 46/135 (34.07%), Postives = 76/135 (56.30%), Query Frame = 3
Query:  276 KWSWRAIKSFAMGELEARKLKHPTTGTEAILMGILVEGTSLAAKVLRANGVTLFKVRDESVKIVGKGDFFFFSPEHPPLTEDAQRVIDWAVDHKLKSGNSGEVTASDLLLGIWSETDSPGHKILAALGFSDEKAK 680
            +++ +AIK   + + EAR+L H   GTE IL+G++ EGT +AAKVL++ GV L   R E  KI+G+G  F       P T  A+RV++ +++   + G++  +    LLLG+  E +    ++L  L     K +
Sbjct:    4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGTEHLLLGLIREGEGVAARVLENLALDLTKVR 135          
The following BLAST results are available for this feature:
BLAST of CF835618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CLPA_BRANA6.129e-1431.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC3.973e-1335.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC5.188e-1335.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA8.850e-1332.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA1.156e-1235.94ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH1.972e-1234.07ATP-dependent Clp protease ATP-binding subunit clp... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01J10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835618 ID=CF835618; Name=CF835618; organism=Citrus sinensis; type=EST; length=813bp
CGAAAATGGCGGCTCTCTTGCTCTCTAATCTGCCATCAACGACCCAAATC
TCTAAATCCGGTTTCGCTACAAAACACAATCAATCTCATACAACTCGCCA
AGCACAGTTTCTTAAAAGCTCATGGCTAATAGGTACCGAAATCAACAGCA
GCAGCGCCAATTTCCCTCTTCGCTCATCGTATATTGTGTCAAAGCGCCGC
CAAATCGCCGCCAAAGTCTTGTCTAGTCTCCCCACCTCGAGATCGAACAG
TGCCGTTTCGAATGAGAAAGCTCCCAAATGGTCTTGGAGGGCAATAAAGT
CATTTGCTATGGGTGAGTTGGAAGCCAGGAAGCTCAAGCATCCAACCACC
GGAACTGAAGCTATTCTCATGGGCATCCTGGTTGAGGGAACTAGTCTGGC
TGCAAAAGTTTTGCGGGCAAATGGAGTGACACTCTTCAAGGTGCGCGATG
AGTCTGTTAAGATAGTTGGAAAGGGCGACTTCTTCTTTTTCAGTCCAGAG
CATCCTCCTCTGACTGAAGATGCTCAAAGGGTCATCGATTGGGCAGTTGA
CCACAAACTAAAATCCGGAAATAGTGGGGAAGTTACAGCAAGTGATTTGC
TTCTTGGTATTTGGTCTGAAACGGATTCACCAGGCCACAAGATACTGGCT
GCCCTGGGCTTCAGTGATGAAAAAGCCAAAGAGCTGGAGTCTTTGAGTTC
TGAACCTGGGTCTGTAGATGACTAATGCCTGCCTTCATATTCAACATATC
CCTTGTTGTAATTCTTTTAATAAGAAAGAGGATNCATGATTCATCTCAAA
AAAAAAAAAAAAA
back to top