CF835625

Overview
NameCF835625
Unique NameCF835625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835625_ssr243 microsatellite CF835625_ssr243:243..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5940 contig Csv1_Contig5940:29..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835625 vs. ExPASy Swiss-Prot
Match: EXOC5_ARATH (Exocyst complex component 5 OS=Arabidopsis thaliana GN=SEC10 PE=2 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 3.027e-75
Identity = 143/184 (77.72%), Postives = 156/184 (84.78%), Query Frame = 2 
Query:  176 FKGDFSFDALFGNLVNELLPSFQEEEADSADGHGNVSGNDTLPNGHKRASSDAIKFTQGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFS 727
            FKGDFSFDALFGNLVN+LLPSF +EEADS DGHGN++G D L NGH R  S  +      +AP FPEVD L SLFKD+C+EL+DLRKQ+D RL  LKKE+S QDSKHRKTL E+EKGVDGLF+SFARLD RISSVGQTAAKIGDHLQSADAQR TASQTIDLIKYLMEFN SPGDLMELS LFS
Sbjct:   27 FKGDFSFDALFGNLVNDLLPSFLDEEADSGDGHGNIAGVDGLTNGHLRGQSAPLS-----SAPFFPEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEIEKGVDGLFESFARLDGRISSVGQTAAKIGDHLQSADAQRETASQTIDLIKYLMEFNGSPGDLMELSALFS 205
[Close]
BLAST of CF835625 vs. ExPASy Swiss-Prot
Match: EXOC5_ORYSJ (Exocyst complex component 5 OS=Oryza sativa subsp. japonica GN=SEC10 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.612e-60
Identity = 125/184 (67.93%), Postives = 139/184 (75.54%), Query Frame = 2 
Query:  176 FKGDFSFDALFGNLVNELLPSFQEEEADSADGHGNVSGNDTLPNGHKRASSDAIKFTQGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFS 727
            FKGDFSFDALFG LV+ELLP F+ ++A  A                            G A P+FP VD L  LFK SC+EL+DLR+QID RL NLKKE++ QD+KHRKTL ELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSA++QR TASQTIDLIKYLMEFNS+PGDLMELSPLFS
Sbjct:   20 FKGDFSFDALFGTLVDELLPEFRGDDAPGAPPPPPP--------------------VLGAAPPVFPAVDELLGLFKHSCKELVDLRRQIDKRLQNLKKEVATQDAKHRKTLGELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSAESQRETASQTIDLIKYLMEFNSTPGDLMELSPLFS 183
The following BLAST results are available for this feature:
BLAST of CF835625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EXOC5_ARATH3.027e-7577.72Exocyst complex component 5 OS=Arabidopsis thalian... [more]
EXOC5_ORYSJ1.612e-6067.93Exocyst complex component 5 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01J15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835625 ID=CF835625; Name=CF835625; organism=Citrus sinensis; type=EST; length=727bp
CCCAACCGAAGCCTTCAGAAAAACGCAAAAGGCCTGTATATCGTACCCCT
CTCTCTGCTGTCTCGCTCCTTCACTCGCCGAAGAGATGAAAGAGAGTCGA
GATGGAATCGGTCATGATAGAATTTCAAAATCGTCATCGGTTAGCTCTAT
TCCACTCATTCTTGACATAGATGACTTCAAGGGTGATTTTTCTTTTGATG
CACTATTTGGGAACTTGGTGAATGAGCTTCTGCCCTCTTTTCAAGAAGAA
GAAGCTGATTCAGCTGATGGACATGGTAACGTTAGCGGGAATGATACTTT
GCCAAACGGGCACAAACGGGCCTCATCAGATGCAATAAAGTTCACACAAG
GATTGGCCGCCCCTTTATTTCCAGAAGTGGATGCTCTCTCATCTCTGTTC
AAGGATTCTTGTAGGGAGCTGATAGATCTTCGTAAACAGATTGATGACAG
ACTCTTCAATCTCAAGAAAGAGCTTTCTGTCCAAGATTCTAAACACCGCA
AGACACTTGCTGAGCTAGAAAAAGGTGTGGACGGCTTGTTTGATAGTTTT
GCAAGATTAGATTCACGTATATCAAGTGTTGGACAGACTGCTGCCAAAAT
AGGAGATCATTTGCAGAGTGCAGATGCTCAGCGGGTAACTGCTAGTCAAA
CTATTGACCTCATAAAGTACTTGATGGAGTTTAACAGCAGCCCAGGTGAC
CTAATGGAACTTTCACCTTTATTTTCT
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