CF835628

Overview
NameCF835628
Unique NameCF835628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835628_ssr719 microsatellite CF835628_ssr719:719..733. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835628_ssr742 microsatellite CF835628_ssr742:742..753. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.927e-76
Identity = 143/199 (71.86%), Postives = 165/199 (82.91%), Query Frame = 2
Query:  101 NNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRR 697
            NN NNVIAPF++KTYQMVNDP+TD LI+WG A+NSFIVVDPLDFSQRILPAYFK NNFSSFVRQLNTYGFRKVDPD+WEFANE FLRGQKHLL NI RRKH+          RG  G QDL+D EIV EI RL++EQ+ L+ E+Q MN+R+EATE+RPEQMMAFLYKVVEDPDLLPR+++EKE T  +    + DKK+R
Sbjct:    9 NNNNNVIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHA----------RGMYG-QDLEDGEIVREIERLKEEQRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKERT--KQQQQVSDKKKR 194          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.554e-51
Identity = 101/180 (56.11%), Postives = 126/180 (70.00%), Query Frame = 2
Query:  122 APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSS--------NRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRII 637
            APFV KTY+MV DP TD +I WGK NNSF+V DP  FSQ +LPA+FK NNFSSFVRQLNTYGFRKVDPD+WEFA+  FLRGQ HLL+NIVRR  ++                  GG G  D D   +  E+ RL+QEQ+++D+ +  M +R++ TERRP+QM+AFL KVV D D L R++
Sbjct:   10 APFVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRRGSAAAGGGGGGGGGKRRDASADGGGGGGDEDMTMVATEVVRLKQEQRTIDDRVAAMWRRVQETERRPKQMLAFLLKVVGDRDKLHRLV 189          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.462e-51
Identity = 101/192 (52.60%), Postives = 134/192 (69.79%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGG--------AGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNN 670
            +APFV KTY+MV+DP TD +I+WG+ +NSF+V DP  FSQ +LPA+FK +NFSSFVRQLNTYGFRKVDPD+WEFA+  FLRGQ HLL+ IVRR  S    A      GG        AGD D +   + +E+ARLR+EQ+ ++  +  M +R++ TERRP+QM+AFL KVV DP +L R++    +    +N
Sbjct:   12 VAPFVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRRS-SGGGGAKRKEEAGGCGGGGEAAAGDVDEESAVVALEVARLRREQREIEGRVAAMWRRVQETERRPKQMLAFLVKVVGDPQVLRRLVDRDNTNAAASN 202          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.527e-50
Identity = 104/229 (45.41%), Postives = 136/229 (59.39%), Query Frame = 2
Query:   98 PNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQ----------------------------DLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRL 700
            P  + N   PF++KTY MV+DP+TD ++SW   NNSF+V DP +F++ +LP YFK NNFSSFVRQLNTYGFRKVDPD+WEFANE FLRGQKHLLK+I RRK +   +       G A  Q                              D   ++ E+ RLRQ+Q+S D +LQGM +RL+  E R +QMM+FL K V  P  L + + ++  +  R     G KKRR+
Sbjct:   32 PMPSANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRLQGMELRQQQMMSFLAKAVNSPGFLAQFVQQQNESNKR--IAEGSKKRRI 258          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.481e-49
Identity = 103/229 (44.98%), Postives = 136/229 (59.39%), Query Frame = 2
Query:   98 PNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQ----------------------------DLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRL 700
            P  + N   PF++KTY MV+DP+TD ++SW   NNSF+V DP +F++ +LP YFK NNFSSFVRQLNTYGFRKVDPD+WEFANE FLRGQKHLLK+I RRK +   +       G A  Q                              D   ++ E+ RLRQ+Q++ D +LQGM +RL+  E R +QMM+FL K V  P  L + + ++  +  R     G KKRR+
Sbjct:   30 PIPSANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQMMSFLAKAVNRPGFLAQFVQQQNESNKR--IAEGSKKRRI 256          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.743e-48
Identity = 100/209 (47.85%), Postives = 138/209 (66.03%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK--HSSNRSAHHMMMR---------GGAGDQD------LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRL 700
            PF+MKTY+MV+DP TD+++SWG  NNSF+V +  +F++ +LP YFK +NFSSFVRQLNTYGFRKVDPD+WEFANE FLRGQKHLLK I RRK  H +N+     +           G  G ++       D   ++ E+ RLRQ+Q++ D +LQ + KRL+  E+R +QMM+FL K +  P  L + + + E+  +R      +KKRRL
Sbjct:   37 PFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPGFLAQFVQQNEN--SRRRIVASNKKRRL 243          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.743e-48
Identity = 104/212 (49.06%), Postives = 134/212 (63.21%), Query Frame = 2
Query:  122 APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKH----SSNRSAHHMMMRGGAGD--------------QDLDDEEIVM--------EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYL 679
            APFV KTYQMV DP TD+L+ WG+ NNSF+VVDP  FSQ +LP +FK  NFSSFVRQLNTYGFRKV PD+WEFA+E FLRGQ HLL  IVRRK                 GGAG+              ++ D  E V+        E+ RLR EQ ++ EEL  M++RL+ATERRP+Q+M+FL K+ +DP+ +   ++E+ +   R   +L
Sbjct:   25 APFVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRKKRGEGGGGGGGASCSFGGGAGEHQVAAAAASVGMSGEEEDAAEDVLAKEAALFEEVQRLRHEQTAIGEELARMSQRLQATERRPDQLMSFLAKLADDPNAVTGHLLEQAAERKRRRQHL 236          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.743e-48
Identity = 99/202 (49.01%), Postives = 135/202 (66.83%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK----HSSNRSAHHMMMRGGAG-----DQDLDDEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRL 700
            PF+ KTY MV+DPTTD+++SW   NNSF+V DP  F   +LP YFK NNFSSFVRQLNTYGFRKVDPDKWEFANE FLRGQKHLLK+I RRK      S +S    +  G  G     DQ   D+ ++M E+ +LRQEQ++   +LQ M ++L+ TE++ + MMAFL +V+ +P+ + ++  + E       +    ++RR+
Sbjct:   38 PFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSRVMHNPEFIRQLFSQSEMRKELEEFVSKKRRRRI 239          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.111e-48
Identity = 105/225 (46.67%), Postives = 142/225 (63.11%), Query Frame = 2
Query:  104 NTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK-------HSSNRSAHHMMMRGGA----------GDQDLDDE---------EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRL 700
            N N++  PF+ KTY MV DP TD+++SW   NNSFIV DP +FS+ +LP YFK NNFSSFVRQLNTYGFRKVDPD+WEFANE FLRGQKHLLK I RRK        SSN  +  +    G+          G   L++E          ++ E+ +LRQ+Q++ D +LQ + K L+  E+R +Q+M+FL K V++P  L + I  ++ T +  +    +KKRRL
Sbjct:   45 NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFI--QKQTDSNMHVTEANKKRRL 267          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.353e-46
Identity = 99/220 (45.00%), Postives = 135/220 (61.36%), Query Frame = 2
Query:  107 TNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQD---------------------LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGD--KKRR 697
            ++N   PF+ KTY MV+D  TDS++SW   NNSFIV  P +F++ +LP  FK NNFSSFVRQLNTYGFRKVDPD+WEFANE FLRGQKHLL++I RRK +  +   H   +   G                         D   ++ E+ RLRQ+Q+S D +LQ M +RL+  E R +Q+M+FL K V+ P  L +  +++++  N +N  + D  KKRR
Sbjct:   31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQ-FLQQQNQQNESNRRISDTSKKRR 249          
The following BLAST results are available for this feature:
BLAST of CF835628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSFC1_ARATH6.927e-7671.86Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HFC2B_ORYSJ1.554e-5156.11Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFC2A_ORYSJ3.462e-5152.60Heat stress transcription factor C-2a OS=Oryza sat... [more]
HSF8_SOLPE8.527e-5045.41Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC2.481e-4944.98Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HSFA1_ORYSJ2.743e-4847.85Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFC1A_ORYSJ2.743e-4849.06Heat stress transcription factor C-1a OS=Oryza sat... [more]
HFA2E_ORYSJ2.743e-4849.01Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA1A_ARATH6.111e-4846.67Heat stress transcription factor A-1a OS=Arabidops... [more]
HFA1D_ARATH3.353e-4645.00Heat stress transcription factor A-1d OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835628 ID=CF835628; Name=CF835628; organism=Citrus sinensis; type=EST; length=785bp
CGCAGCACAGCACAGTACAGCACGCACCCTTTGTTCCTCCCCACCGTCTC
ACTCTCTCCTTCTCTTTTGAGTCTTTTTTCCTCTGTATGGGATGGAGCCC
AACAACACCAACAACGTGATCGCTCCGTTCGTTATGAAGACTTATCAGAT
GGTCAACGATCCAACGACCGATTCGCTAATCTCCTGGGGTAAAGCCAATA
ACAGCTTCATCGTTGTCGACCCTTTAGATTTCTCCCAAAGGATCCTGCCC
GCCTACTTCAAGGACAACAACTTCTCTAGCTTTGTTCGTCAACTCAACAC
CTACGGTTTTAGAAAAGTTGATCCGGACAAATGGGAATTTGCGAACGAGT
GGTTTCTGCGAGGGCAGAAGCACTTGCTGAAGAACATCGTAAGGAGAAAG
CACAGCAGTAACAGAAGCGCTCATCACATGATGATGAGAGGCGGTGCCGG
CGACCAAGATTTAGATGATGAAGAAATAGTGATGGAGATAGCGAGGTTGA
GGCAAGAGCAGAAGTCTTTAGATGAAGAGCTTCAGGGCATGAACAAGAGA
CTGGAAGCAACAGAGAGGCGCCCTGAACAAATGATGGCGTTTCTTTACAA
AGTCGTTGAAGATCCCGACTTGCTTCCTCGCATCATCATGGAAAAAGAAA
GCACCACCAACAGGAATAATTATTATCTTGGGGACAAAAAGAGACGCTTG
ATGATCTCGTCGTCATCACAGCAGCAGCAGCAGCCTTCTAATTCTTCTTC
TTCGGGCATGGCAGCTTCGAGCTCGATAAAATCTG
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