CF835629

Overview
NameCF835629
Unique NameCF835629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835629_ssr624 microsatellite CF835629_ssr624:624..635. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12382 contig Csv1_Contig12382:18..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.243e-95
Identity = 165/215 (76.74%), Postives = 187/215 (86.98%), Query Frame = 2
Query:   44 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAV 688
            MALVLH G  NKN FK LIAAEY GV+V+L +NFEMGV+NK+PEFLKMNPLGK+PVLETP+G VFESNAIARYVARLK ++ LCGSSLIDY+H+EQWMDFSA E+DANI RWLYPRLG+  Y+P+ EE A+ +LKR+L ALN HLASNTYLVGHSVTLADIVM CNLYYGF  I+ K+FTSEFPHVERYFWT+ NQP  KK +GDFKQAESVP V
Sbjct:    1 MALVLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPV 215          
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 345.125 bits (884), Expect = 2.480e-94
Identity = 165/215 (76.74%), Postives = 185/215 (86.05%), Query Frame = 2
Query:   44 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAV 688
            MALVLH G  NKN FK LIAAEY+GV+V+L +NF+MGV+NK+PEFLKMNP+GK+PVLETPDGPVFESNAIARYV R KADN L GSSLI+YAH+EQW DFSA E+DANI +WLYPRLG   Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK+FTSEFPHVERYFWT+ NQP  KK LGD KQAESVP V
Sbjct:    1 MALVLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVFESNAIARYVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQAESVPPV 215          
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.959e-92
Identity = 159/215 (73.95%), Postives = 185/215 (86.05%), Query Frame = 2
Query:   44 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAV 688
            MALVLH    NKN FK LIAAEY+GV+V+LA+NF+MGV+NK+PE+LKMNP+GKVP+LETPDGPVFESNAIARYV R K+DN L GSSLI+YAH+EQW+DFSA E+DAN  +WL+PRLG+  Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK FTSEFPHVERYFWT+ NQP  KK +GD KQA+SVP V
Sbjct:    1 MALVLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQADSVPQV 215          
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.152e-91
Identity = 159/215 (73.95%), Postives = 183/215 (85.12%), Query Frame = 2
Query:   44 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAV 688
            MALVLH G+ NKN FK LI AEY GV+V+LA +FEMGVTNK+PE+LK+NP+GKVP+LETPDGP+FESNAIARYVARLKADN L GSSLIDYAH+EQW+DF ++EIDANI  W  PR GY  Y+P AEE A++ALKRAL ALN HLASNTYLVGH VTLADI++ CNL++GF  +M K+FTSEFPHVERYFWT+ NQPK KK LGD KQ ESVP V
Sbjct:    1 MALVLHAGKTNKNAFKTLIVAEYTGVKVELAPDFEMGVTNKTPEYLKLNPIGKVPLLETPDGPIFESNAIARYVARLKADNPLIGSSLIDYAHIEQWIDFGSLEIDANIISWFRPRFGYAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHFVTLADIIVTCNLFFGFTKLMIKSFTSEFPHVERYFWTLVNQPKFKKVLGDVKQTESVPPV 215          
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.155e-83
Identity = 148/215 (68.84%), Postives = 177/215 (82.33%), Query Frame = 2
Query:   44 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAV 688
            MALV+H  + NK   K LIAAEYAGV+++ + +F+MGVTNKSPEFLKMNP+GKVPVLETP+GP+FESNAIARYV+R   DN L GSSLI+YAH+EQW+DFS++EIDAN+ +W  PR+GY  +   AEE A++ALKR L+ALN HLASNT+LVGHSVTLADIV ICNL  GF  +MTK FTS FPHVERYFWT+ NQP+ KK LGD KQ E+VP V
Sbjct:    1 MALVMHTYKGNKGANKALIAAEYAGVKIEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSSLEIDANMLKWFAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPV 215          
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.178e-82
Identity = 146/215 (67.91%), Postives = 173/215 (80.47%), Query Frame = 2
Query:   44 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAV 688
            MALVLH  + NK+  K LIAAEY GV++ +  +F+MGVTNK+P FLKMNP+GKVPVLETP+G VFESNAIARYV+RL  DN L GSSLI+YA +EQW+DFS++EI A+I RW  PR+G+M Y   AEEGA++ LKRALDALN HL SNTYLVGHS+TLADI+ +CNL  GF  +MTK FTSEFPHVERYFWTV NQP   K LGD KQ E+VP +
Sbjct:    1 MALVLHTYKGNKSAEKALIAAEYVGVQIDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGSVFESNAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSSLEIYASILRWFGPRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVERYFWTVVNQPNFTKVLGDVKQTEAVPPI 215          
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 7.835e-40
Identity = 90/207 (43.48%), Postives = 128/207 (61.84%), Query Frame = 2
Query:   56 LHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGP-VFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAE 673
            L+   EN   FK LIAA+Y+G ++++A++F  G TNKS  FLK  PLGKVP  E+ DG  + ESNAIA YVA    +  L GSS ++ A + QWM F+  EI      W++P LG MQ+   A   A   + +AL AL+ HL + TYLVG  +TLADIV+ C L + ++H++ + F   + +  R+F T+ NQ ++K  +GDFK  E
Sbjct:    6 LYTYPENFRAFKALIAAQYSGAKLEIAKSFVFGETNKSDAFLKSFPLGKVPAFESADGHCIAESNAIAYYVA----NETLRGSSDLEKAQIIQWMTFADTEILPASCTWVFPVLGIMQFNKQATARAKEDIDKALQALDDHLLTRTYLVGERITLADIVVTCTLLHLYQHVLDEAFRKSYVNTNRWFITLINQKQVKAVIGDFKLCE 208          
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.930e-38
Identity = 88/212 (41.51%), Postives = 128/212 (60.38%), Query Frame = 2
Query:   56 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESV 679
            L+   +N   +K LIAA+Y+G  +K+A +   F+ GVTNK+PEFLK  PLGKVP  E  DG  +FES+AIA YV     +++L G++ +  A V QW+ FS   I    S W++P LG MQY   A E A   +K  L  L+ HL + T+LVG  +TLADI + C+L + +K ++  +F   F +V R+F T  NQP+ +  LG+ K  + +
Sbjct:    6 LYTYPDNWRAYKPLIAAQYSGFPIKVASSAPEFQFGVTNKTPEFLKKFPLGKVPAFEGKDGFCLFESSAIAHYVG----NDELRGTTRLHQAQVIQWVSFSDSHIVPPASAWVFPTLGIMQYNKQATEQAKEGIKTVLGVLDSHLQTRTFLVGERITLADITVTCSLLWLYKQVLEPSFRQPFGNVTRWFVTCVNQPEFRAVLGEVKLCDKM 213          
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.615e-38
Identity = 88/212 (41.51%), Postives = 125/212 (58.96%), Query Frame = 2
Query:   56 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESV 679
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F T  NQP+ +  LG+ K  E +
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKM 213          
BLAST of CF835629 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.334e-38
Identity = 87/212 (41.04%), Postives = 125/212 (58.96%), Query Frame = 2
Query:   56 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESV 679
            L+   EN   FK LIAA+Y+G ++++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F T  NQP+ +  LG+ K  E +
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKM 213          
The following BLAST results are available for this feature:
BLAST of CF835629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
EF1G3_ORYSJ2.243e-9576.74Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ2.480e-9476.74Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G1_ORYSJ3.959e-9273.95Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G_PRUAV1.152e-9173.95Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G2_ARATH1.155e-8368.84Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH2.178e-8267.91Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G_ARTSA7.835e-4043.48Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1GA_XENLA1.930e-3841.51Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_MOUSE5.615e-3841.51Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_RAT7.334e-3841.04Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835629 ID=CF835629; Name=CF835629; organism=Citrus sinensis; type=EST; length=775bp
CGCATTCATCTGCATTTTGAGCGAATCGTTTCTCCGTTAAGCCATGGCTC
TGGTCTTGCATGTTGGGCAGGAAAACAAAAATGGATTCAAAGGACTCATT
GCTGCTGAGTACGCTGGTGTGGAAGTCAAATTGGCTGAGAATTTTGAGAT
GGGTGTCACTAATAAATCCCCTGAATTTTTGAAGATGAACCCTCTTGGGA
AGGTTCCTGTGTTGGAGACACCTGATGGTCCGGTTTTTGAGAGCAATGCC
ATTGCCCGTTATGTTGCACGTCTGAAAGCTGACAATCAACTATGTGGTTC
TTCTCTGATCGATTATGCTCATGTTGAGCAGTGGATGGATTTTTCTGCCA
TGGAGATTGATGCTAATATCTCCAGGTGGTTATATCCAAGACTTGGATAT
ATGCAATACATTCCTCTGGCTGAGGAAGGTGCTGTTGCCGCACTGAAGAG
AGCATTGGATGCTTTGAACATTCATTTGGCTTCAAATACGTACTTGGTTG
GCCATTCTGTCACCCTGGCTGACATTGTCATGATATGCAATTTATATTAT
GGATTTAAGCACATCATGACGAAGACTTTCACCTCTGAGTTTCCCCATGT
TGAGAGATACTTTTGGACCGTGGCCAACCAACCAAAAATTAAGAAGTTTT
TGGGTGATTTTAAGCAAGCCGAATCTGTCCCAGCTGTTCAGTCTGCAAAG
AAGCCTGCTCAAGCTAAGGAATCTGCTAAACCAAAGGCCAAGGCGGAACC
AAAGAAAGAAGCACCAAAGCCCAAA
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