CF835643

Overview
NameCF835643
Unique NameCF835643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835643_ssr162 microsatellite CF835643_ssr162:162..177. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4567 contig Csv1_Contig4567:1548..2127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835643 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.142e-33
Identity = 73/113 (64.60%), Postives = 87/113 (76.99%), Query Frame = -3
Query:  244 KRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTV-SSMPSNTNSFAHLEWSDGKYIVGSPIAISW 579
            K YS+AD NYPSFAVN++      G    KYTR++T+VG  GTY V +TS T  GVKISVEPA L+F +ANEKKSYTVTFTV SS PS +NSF  +EWSDGK++VGSP+AISW
Sbjct:  651 KSYSVADLNYPSFAVNVD------GVGAYKYTRTVTSVGGAGTYSVKVTSET-TGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756          
The following BLAST results are available for this feature:
BLAST of CF835643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SUBL_ARATH4.142e-3364.60Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01K03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835643 ID=CF835643; Name=CF835643; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTGTTCTCACAACTCTAATCTTTAACATAATCCACT
GGTCGATCCACTAGACATGCATACAGCAAATACACATGTAGTCAACATAA
AATAATAACACTGTGCACTGAGAAAGAAAAATAGCTACCCATTCCTTGGT
TTTCCACTCTGTCTCTCTCTCTCTCTCACAGAACAACATTAATTTAACAC
TAGACCCAGCAATCCGTTTGTTTAGCTGGATAACAATTTAATTCCAGCTG
ATCGCAATGGGACTTCCAACAATGTACTTCCCATCTGACCACTCAAGATG
AGCAAAGCTGTTGGTATTTGATGGCATTGAACTAACAGTGAATGTCACCG
TATATGATTTCTTCTCGTTCGCTTGAGTGAAACTCAACGTTGCTGGCTCA
ACTGAAATCTTAACTCCAGGCCCTGTTGATGATGTTATAAACACTTTGTA
TGTCCCTGGTGGGCCCACGTTTGTAAGAGAGCGGGTGTATTTCAAAACAC
TAGACCCACTGCTACTTTGTGCGGTTTCAATATTGACAGCAAATGAAGGA
TAATTGAAGTCAGCGAGGCTGTATCTTTTGC
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