CF835644

Overview
NameCF835644
Unique NameCF835644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length305
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835644 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.226e-37
Identity = 80/100 (80.00%), Postives = 85/100 (85.00%), Query Frame = 2
Query:    2 GTAPFMATRARVAAYKVPWVGGCFSSDILAAIEQVIDDNVNVLSMSLGGGTSDYYEDNIAIGAFAAMEKGILVSCSAGNAGPRSYRLSNVAP*ITTVCAG 301
            GTA  MA RARVA YKV W+GGCFSSDILAAI++ I DNVNVLSMSLGGG SDYY D +AIGAFAAME+GILVSCSAGNAGP S  LSNVAP ITTV AG
Sbjct:  236 GTARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAG 335          
BLAST of CF835644 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.844e-18
Identity = 49/100 (49.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    2 GTAPFMATRARVAAYKVPWV-GGCFSSDILAAIEQVIDDNVNVLSMSLGGGTSDYYEDNIAIGAFAAMEKGILVSCSAGNAGPRSYRLSNVAP*ITTVCA 298
            GTA      AR+A YKV W   GC   DILA  E  I D V ++S+S+GG  +DY  D+I++G+F AM KGIL   SAGN GP S  ++N  P I TV A
Sbjct:  234 GTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAA 333          
BLAST of CF835644 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.263e-18
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:    2 GTAPFMATRARVAAYKVPWVGGCFSSDILAAIEQVIDDNVNVLSMSLGGGT-SDYYEDNIAIGAFAAMEKGILVSCSAGNAGPRSYRLSNVAP*ITTVCA 298
            GTA      AR+AAYKV W  GC  +DILAA +  I D V+++S+S+GG     Y+ D IAIG+F A+E+GIL S SAGN GP  +  ++++P + +V A
Sbjct:  228 GTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 327          
The following BLAST results are available for this feature:
BLAST of CF835644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH1.226e-3780.00Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
XSP1_ARATH4.844e-1849.00Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
CUCM1_CUCME8.263e-1847.00Cucumisin OS=Cucumis melo PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01K03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835644 ID=CF835644; Name=CF835644; organism=Citrus sinensis; type=EST; length=305bp
CGGGACGGCGCCTTTTATGGCCACGCGCGCCAGGGTTGCTGCCTACAAGG
TGCCCTGGGTTGGTGGTTGTTTTAGCTCTGATATATTGGCGGCCATAGAG
CAGGTCATCGATGATAATGTCAATGTTTTATCAATGTCTCTTGGTGGCGG
CACGTCTGATTATTACGAGGATAATATTGCCATTGGTGCTTTTGCAGCAA
TGGAGAAAGGGATTCTAGTGTCTTGCTCAGCTGGAAATGCTGGTCCAAGA
TCCTACAGGTTATCCAACGTGGCTCCATGAATAACTACTGTATGTGCAGG
TCCTC
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