CF835651

Overview
NameCF835651
Unique NameCF835651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1118 contig Csv1_Contig1118:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.516e-103
Identity = 179/240 (74.58%), Postives = 211/240 (87.92%), Query Frame = 3
Query:    3 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            FAGIIV+ LDELLQKGYG+GSGISLFIATNICE+I+WK FSPTT++ G+G EFEGAVIALFHLL+T+ +KV AL+EAFYRQNLPNITNLLATVL+F++V+YFQGF+V LPV+S    GQQG YPIKLFYTSN+PIILQSALVSNLYFISQLLYR++  N  VNL G W+ SEYS   IPV GL YY+++P +++ + A+PFHALFY+ FMLT+CALFSK WIEVSGSSARDVAKQLK+QQ
Sbjct:  158 FAGIIVMLLDELLQKGYGIGSGISLFIATNICETIVWKTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFYRQNLPNITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQSALVSNLYFISQLLYRRFPDNILVNLFGAWRTSEYSQQMIPVSGLTYYISSPNNMSAVLADPFHALFYITFMLTSCALFSKVWIEVSGSSARDVAKQLKDQQ 397          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: S61A2_DANRE (Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio GN=sec61al2 PE=2 SV=3)

HSP 1 Score: 350.132 bits (897), Expect = 6.821e-96
Identity = 168/241 (69.71%), Postives = 201/241 (83.40%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYLSPPESFGTVLEDPIHAIIYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: S61A1_DANRE (Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3)

HSP 1 Score: 350.132 bits (897), Expect = 6.821e-96
Identity = 170/241 (70.54%), Postives = 201/241 (83.40%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLDDPVHAVIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_GADOC (Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3)

HSP 1 Score: 348.206 bits (892), Expect = 2.592e-95
Identity = 170/241 (70.54%), Postives = 199/241 (82.57%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY + P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYFSPPESFGSVLDDPVHASIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 348.206 bits (892), Expect = 2.592e-95
Identity = 171/241 (70.95%), Postives = 202/241 (83.82%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTTIN+GRG EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 348.206 bits (892), Expect = 2.592e-95
Identity = 171/241 (70.95%), Postives = 202/241 (83.82%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTTIN+GRG EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: S61A2_BOVIN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 348.206 bits (892), Expect = 2.592e-95
Identity = 171/241 (70.95%), Postives = 202/241 (83.82%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTTIN+GRG EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: S61A1_ONCMY (Protein transport protein Sec61 subunit alpha isoform A OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3)

HSP 1 Score: 348.206 bits (892), Expect = 2.592e-95
Identity = 169/241 (70.12%), Postives = 200/241 (82.99%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL Y+++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLLNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVLDDPIHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_PAGBO (Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3)

HSP 1 Score: 347.436 bits (890), Expect = 4.422e-95
Identity = 170/241 (70.54%), Postives = 199/241 (82.57%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_NOTAN (Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3)

HSP 1 Score: 347.436 bits (890), Expect = 4.422e-95
Identity = 170/241 (70.54%), Postives = 199/241 (82.57%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
The following BLAST results are available for this feature:
BLAST of CF835651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_DICDI1.516e-10374.58Protein transport protein Sec61 subunit alpha OS=D... [more]
S61A2_DANRE6.821e-9669.71Protein transport protein Sec61 subunit alpha-like... [more]
S61A1_DANRE6.821e-9670.54Protein transport protein Sec61 subunit alpha-like... [more]
SC61A_GADOC2.592e-9570.54Protein transport protein Sec61 subunit alpha OS=G... [more]
S61A2_MOUSE2.592e-9570.95Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN2.592e-9570.95Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_BOVIN2.592e-9570.95Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_ONCMY2.592e-9570.12Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_PAGBO4.422e-9570.54Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NOTAN4.422e-9570.54Protein transport protein Sec61 subunit alpha OS=N... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835651 ID=CF835651; Name=CF835651; organism=Citrus sinensis; type=EST; length=724bp
GCTTTGCTGGAATCATTGTGATATGCCTGGATGAACTTCTGCAGAAGGGA
TATGGCTTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATTTGTGA
AAGCATTATTTGGAAAGCTTTTAGCCCCACAACCATAAACAGTGGCCGGG
GAGCTGAATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAACC
AAGCAAAACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACCT
TCCCAATATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTTG
TCTACTTTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGCC
CGTGGGCAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACAT
GCCTATCATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTC
AGTTGCTCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGG
AAGTGGAAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCT
AGCTTATTATGTCACTGCACCAGCAAGCTTGGCTGATATGGCAGCCAATC
CTTTCCATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTT
TTCTCGAAAACTTGGATTGAAGTTTCAGGGTCTTCTGCCCGGGATGTGGC
CAAGCAGCTTAAGGAGCAACAAAT
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