CF835653

Overview
NameCF835653
Unique NameCF835653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835653_ssr170 microsatellite CF835653_ssr170:170..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835653 vs. ExPASy Swiss-Prot
Match: BEH2_ARATH (BES1/BZR1 homolog protein 2 OS=Arabidopsis thaliana GN=BEH2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.034e-49
Identity = 109/202 (53.96%), Postives = 125/202 (61.88%), Query Frame = 2
Query:  152 RLPTWXXXXXXXXXXXXXXXXXXXXFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGSRPPRTPSEITGGSANISTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRFEGNPSNY-ILPFLQNIA-SVPTNLPRLRISNSAPVTPPLSSPTSRGPKRKTDWESISN-GTLSSFRHPLFAVSAPSSPTR 748
            R PTW                    +SGLRA+GN+KLPKHCDNNEVLKALC EAGWIVE+DGTTYRKG +PP   S+I+G   N ST                                +R++GNPS+Y +LPFL NIA S+P NLP LRISNSAPVTPPLSSPTSRG KRK   E + N G+L   RHPLFA+SAPSSPTR
Sbjct:   16 RTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPP--ASDISGTPTNFSTNSSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNPSSYLLLPFLHNIASSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKLTSEQLPNGGSLHVLRHPLFAISAPSSPTR 215          
BLAST of CF835653 vs. ExPASy Swiss-Prot
Match: BZR1_ARATH (Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis thaliana GN=BZR1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.076e-38
Identity = 88/207 (42.51%), Postives = 115/207 (55.56%), Query Frame = 2
Query:  152 RLPTWXXXXXXXXXXXXXXXXXXXXFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGSRPPRTPSEITGGSANISTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRFE--GNPSNYILPFLQNIASVPTNLPRLRISNSAPVTPPLSSPTSRGPKRKTDWES-------ISNGTLSSFRHPLFAVSAPSSPT 745
            R P+W                    ++GLRA+G++ LPKHCDNNEVLKALC EAGW+VEEDGTTYRKG +P   P EI G S+ ++                                 +R E   N S+   PFL+N   +P++LP LRISNS PVTPP+SSPTS+ PK   +WES       I+  +++SF +P +AVSAP+SPT
Sbjct:   23 RKPSWRERENNRRRERRRRAVAAKIYTGLRAQGDYNLPKHCDNNEVLKALCVEAGWVVEEDGTTYRKGCKP--LPGEIAGTSSRVTPYSSQNQSPLSSAFQSPIPSYQVSPSSSSFPSPSRGEPNNNMSSTFFPFLRN-GGIPSSLPSLRISNSCPVTPPVSSPTSKNPKPLPNWESIAKQSMAIAKQSMASFNYPFYAVSAPASPT 226          
BLAST of CF835653 vs. ExPASy Swiss-Prot
Match: BZR2_ARATH (Protein BRASSINAZOLE-RESISTANT 2 OS=Arabidopsis thaliana GN=BZR2 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.023e-37
Identity = 89/208 (42.79%), Postives = 114/208 (54.81%), Query Frame = 2
Query:  152 RLPTWXXXXXXXXXXXXXXXXXXXXFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGSRPPRTPSEITGGSANISTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRFEGNPSNY--ILPFLQNIASVPTNLPRLRISNSAPVTPPLSSPTSRGPKRKTDWESISNGTLS--------SFRHPLFAVSAPSSPT 745
            R P+W                    ++GLRA+GN+ LPKHCDNNEVLKALC+EAGW+VEEDGTTYRKG +P   P ++ G S+  +                                 +R  G+P N   I PFL+N   +P++LP LRISNSAPVTPP+SSPTSR PK    WES +  ++S        S  +P +AVSAP+SPT
Sbjct:   22 RKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGHKP--LPGDMAGSSSRATPYSSHNQSPLSSTFDSPILSYQVSPSSSSFPSPSRV-GDPHNISTIFPFLRN-GGIPSSLPPLRISNSAPVTPPVSSPTSRNPKPLPTWESFTKQSMSMAAKQSMTSLNYPFYAVSAPASPT 225          
BLAST of CF835653 vs. ExPASy Swiss-Prot
Match: BEH1_ARATH (BES1/BZR1 homolog protein 1 OS=Arabidopsis thaliana GN=BEH1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.955e-34
Identity = 89/200 (44.50%), Postives = 103/200 (51.50%), Query Frame = 2
Query:  152 RLPTWXXXXXXXXXXXXXXXXXXXXFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGSRPPRTPSEITGGSANISTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRFEGNPSN-YILPFLQNIASVPTNLPRLRISNSAPVTPPLSSPTSRGPKRKTDWESISNGTLSSFRHPLFAVSAPSSPTR 748
            R+PTW                    F+GLR++GN+KLPKHCDNNEVLKALC EAGWIV EDGTTYRKGSRP  T             C                               TRF+ N S+ Y++P+LQN+AS   NL  LRISNSAPVTPP+SSP    P R   W+S +           F VSAPSSPTR
Sbjct:   14 RMPTWKERENNKKRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGTTYRKGSRPTET----------TVPCSSIQLSPQSSAFQSPIPSYQASPSSSSYPSPTRFDPNQSSTYLIPYLQNLAS-SGNLAPLRISNSAPVTPPISSPRRSNP-RLPRWQSSN-----------FPVSAPSSPTR 190          
BLAST of CF835653 vs. ExPASy Swiss-Prot
Match: BEH4_ARATH (BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.834e-30
Identity = 83/210 (39.52%), Postives = 100/210 (47.62%), Query Frame = 2
Query:  152 RLPTWXXXXXXXXXXXXXXXXXXXXFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGSRPPRTPSEITGGSANISTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRFEGNPSNYILPFLQNI-------ASVPTNLPRLRI----SNSAPVTPPLSSPTSRGPKRKTDWESISNGTLSSFRHPLFAVSAPSSPTR 748
            R+PTW                    F+GLR  GN++LPKHCDNNEVLKALC EAGWIVE DGTTYRKG   P    EI GGSA  S C                               T  +G     ++P+L+++       AS  + LP        S SAPVTPPLSSPT+R P+  TDW+ ++N          F  S P SPTR
Sbjct:    6 RMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCSRPVERMEIGGGSATASPCSSYQPSPCASYNPSPGSSNFMSPASSSFANLTSGDGQS---LIPWLKHLSTTSSSSASSSSRLPNYLYIPGGSISAPVTPPLSSPTARTPRMNTDWQQLNNS--------FFVSSTPPSPTR 204          
BLAST of CF835653 vs. ExPASy Swiss-Prot
Match: BEH3_ARATH (BES1/BZR1 homolog protein 3 OS=Arabidopsis thaliana GN=BEH3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.318e-23
Identity = 75/200 (37.50%), Postives = 93/200 (46.50%), Query Frame = 2
Query:  152 RLPTWXXXXXXXXXXXXXXXXXXXXFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGSRPPRTPSEITGGSANISTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRFEGNPSNYILPFLQNIAS-VPTNLPRLR-ISNSAPVTPPLSSPTSRGPKRKTDWESISNGTLSSFRHPLFAVSAPSSPT 745
            R PTW                    F+GLR  GNFKLPKHCDNNEVLKALC EAGW VE+DGTTYRKG + P    ++  GS + S C                                      +N ++P+L+N++S  P+ LP     S SAPVTPPL+   +R      D     +G LS  + P    S PSSPT
Sbjct:    6 RTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAGWTVEDDGTTYRKGCK-PMDRMDLMNGSTSASPCSSYQHSPRASYNPSPSSSSFPSPTNPF---------GDANSLIPWLKNLSSNSPSKLPFFHGNSISAPVTPPLARSPTRDQVTIPD-----SGWLSGMQTP---QSGPSSPT 187          
The following BLAST results are available for this feature:
BLAST of CF835653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BEH2_ARATH1.034e-4953.96BES1/BZR1 homolog protein 2 OS=Arabidopsis thalian... [more]
BZR1_ARATH4.076e-3842.51Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis th... [more]
BZR2_ARATH2.023e-3742.79Protein BRASSINAZOLE-RESISTANT 2 OS=Arabidopsis th... [more]
BEH1_ARATH7.955e-3444.50BES1/BZR1 homolog protein 1 OS=Arabidopsis thalian... [more]
BEH4_ARATH1.834e-3039.52BES1/BZR1 homolog protein 4 OS=Arabidopsis thalian... [more]
BEH3_ARATH6.318e-2337.50BES1/BZR1 homolog protein 3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01K09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835653 ID=CF835653; Name=CF835653; organism=Citrus sinensis; type=EST; length=749bp
GAGACTGGAGACATTAAGATAAAAGTCTTTTCATTTTCTGTCTCTCGATT
CTCTCTAGTGCAAACCAAGTTCACAGCTAGATCGAATTAATTTTTTTTTA
AAAAAAGAGAGAGACGCATCTGGAGCAATGACAGCGGGAGGCTCATCAGG
GAGGCTGCCGACGTGGAAGGAGAGAGAGAACAACAAGAGGAGGGAGAGAA
GGAGAAGAGCCATAGCCGCTAAGATATTTTCTGGGCTTAGAGCTGAGGGC
AACTTTAAACTACCAAAACATTGTGACAATAACGAGGTTTTGAAAGCCCT
CTGTGCTGAGGCTGGCTGGATCGTTGAAGAAGATGGTACCACTTATCGCA
AGGGAAGCAGGCCACCACGAACCCCATCTGAAATTACAGGCGGTTCAGCA
AACATCAGTACATGTTCCTCTGTTCAACCAAGCCCTCAATCCTCAGCTTT
CCCCAGTCCTGTGCCCTCTTATCAGGCCAGCCCAACTTCATCCTCATTTC
CAAGTCCCACTCGTTTCGAGGGAAATCCCTCAAATTACATTCTCCCGTTC
CTTCAAAACATTGCTTCAGTTCCTACAAATTTACCTCGTCTTAGAATATC
CAATAGTGCTCCAGTAACCCCACCTCTTTCATCTCCAACTTCTAGAGGTC
CAAAACGAAAGACTGATTGGGAATCCATTTCAAATGGCACCTTGAGCTCA
TTTCGCCATCCCCTGTTTGCGGTATCTGCTCCTTCAAGCCCTACTCGTC
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