CF835658

Overview
NameCF835658
Unique NameCF835658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6305 contig Csv1_Contig6305:727..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK_SCHPO ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC644.11c PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37
Identity = 80/141 (56.74%), Postives = 107/141 (75.89%), Query Frame = -1
Query:  207 YVPSHLHFMVFELVKNSLRA-VEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPL-DENTDLAADMGT--MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQEPL 617
            YV SHL+  VFE++KNSLRA VE   +DSD   PPI++IVA G ED+TIK+SDEGGGI R  +P +++Y+++ A   L D+  D+ +   T  MAG+G+GLP++RLY RYFGGDL++ISMEGYGTD Y+HL+RL +  EPL
Sbjct:  285 YVESHLNHAVFEILKNSLRATVEFHGVDSD-FFPPIKVIVAKGQEDITIKISDEGGGISRRNIPLVWSYMFTTASPTLTDDPHDIVSANSTTPMAGFGFGLPLARLYTRYFGGDLELISMEGYGTDVYIHLNRLCESAEPL 424          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK_DROME ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35
Identity = 74/154 (48.05%), Postives = 103/154 (66.88%), Query Frame = -1
Query:  162 YVPSHLHFMVFELVKNSLRAVEERY-MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD-FQEPLP*ISTASKEIYGSPV 617
            YVPSHL++M+FEL KNS+RAV E +  D++   PP+++ +  G ED+ +K+SD+GGGIPRS   ++F Y+YS A  P   +         +AGYGYGLPISRLYARYF GD+ ++S EG+GTDA ++L  L D   E LP  +  S + Y + V
Sbjct:  242 YVPSHLYYMLFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIPRSQTDQLFKYMYSTAPQPSKSDLHTVP----LAGYGYGLPISRLYARYFHGDIVLLSCEGFGTDAIIYLKALSDEANELLPIFNKTSSKFYRATV 391          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK_ASCSU ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.879e-33
Identity = 73/145 (50.34%), Postives = 102/145 (70.34%), Query Frame = -1
Query:  183 VPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DFQEPLP*ISTASK 614
            VPSHL+ ++FEL KNS+RA  E +  +D+  PPI+++V  G ED++IK+SD GGG+ R+ L ++FTY+YS A  P  + T        +AGYGYGLP+SRLYARYF GD+ ++SMEGYGTDA + L  +  +  E LP  ST+S+
Sbjct:  237 VPSHLYHIMFELFKNSMRATVENH-GADEDLPPIKVMVVRGAEDLSIKISDRGGGVSRTILDRLFTYMYSTAPPPPRDGTQ-----PPLAGYGYGLPLSRLYARYFHGDMYLVSMEGYGTDAMIFLKAIPVEASEVLPIYSTSSR 375          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK4_SPETR ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Spermophilus tridecemlineatus GN=PDK4 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.131e-32
Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = -1
Query:   93 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 617
            YVPSHLH M+FEL KN++RA  ER  +S     P+ +IV  G ED+TIK+SD GGG+P     ++F+Y+YS A  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L  L            +S+ +   PV N    S F  YQ S  + D  I
Sbjct:  243 YVPSHLHHMLFELFKNAMRATVER-QESWPSLTPVEVIVVLGKEDLTIKISDRGGGVPLRITDRLFSYMYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKAL------------SSESVEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK4_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.131e-32
Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = -1
Query:   93 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 617
            YVPSHLH M+FEL KN++RA  E + ++     PI +IV  G ED+TIK+SD GGG+P   + ++F+Y YS A  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L  L            +S+ I   PV N    S F  YQ S  + D  I
Sbjct:  243 YVPSHLHHMLFELFKNAMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKAL------------SSESIEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK2_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.395e-32
Identity = 73/140 (52.14%), Postives = 99/140 (70.71%), Query Frame = -1
Query:  204 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DFQEPLP 617
            YVPSHL+ M+FEL KN++RA  E + +S  + PPI+++VA G ED++IK+SD GGG+P   + ++F+Y+YS A  P           GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  D  E LP
Sbjct:  240 YVPSHLYHMLFELFKNAMRATVESH-ESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTG------GTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK1_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.395e-32
Identity = 73/149 (48.99%), Postives = 101/149 (67.79%), Query Frame = -1
Query:  174 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DFQEPLP*ISTASKEIY 617
            YVPSHL+ MVFEL KN++RA  E + D   V PPI++ V  G ED+T+K+SD GGG+P S + ++F Y+YS A  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  +  E LP  + A+ + Y
Sbjct:  266 YVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQVHVTLGEEDLTVKMSDRGGGVPLSKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTESVERLPVYNKAAWKHY 409          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK4_RHIFE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rhinolophus ferrumequinum GN=PDK4 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 81/190 (42.63%), Postives = 113/190 (59.47%), Query Frame = -1
Query:   51 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGIIKQSQ-GNLYKI*IAV 617
            YVPSHLH M+FEL KN++RA  E + +++    P+ + V  G ED+TIK+SD GGG+P     ++F+Y+YS A  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L  L            +S+ +   PV N    S F  YQ S  + D  I   +  NL K  +AV
Sbjct:  243 YVPSHLHHMLFELFKNAMRATVE-HQENEPSLTPVEVTVVLGKEDLTIKISDRGGGVPLRITDRLFSYMYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLHLYSLSGYGTDAIIYLKAL------------SSESVEKLPVFN---KSAFKHYQMSIEADDWCIPSKEPKNLAKEKVAV 412          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK2_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = -1
Query:  204 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DFQEPLP 617
            YVPSHL+ M+FEL KN++RA  E + +S    PPI+I+VA G ED++IK+SD GGG+P   + ++F+Y+YS A  P           GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  D  E LP
Sbjct:  240 YVPSHLYHMLFELFKNAMRATVESH-ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTG------GTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK2_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = -1
Query:  204 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DFQEPLP 617
            YVPSHL+ M+FEL KN++RA  E + +S    PPI+I+VA G ED++IK+SD GGG+P   + ++F+Y+YS A  P           GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  D  E LP
Sbjct:  240 YVPSHLYHMLFELFKNAMRATVESH-ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRRIERLFSYMYSTAPTPQPGTG------GTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372          
The following BLAST results are available for this feature:
BLAST of CF835658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDK_SCHPO5.570e-3756.74[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK_DROME8.892e-3548.05[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK_ASCSU4.879e-3350.34[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK4_SPETR4.131e-3245.14[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_HUMAN4.131e-3245.14[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_HUMAN5.395e-3252.14[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_MOUSE5.395e-3248.99[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RHIFE9.202e-3242.63[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_RAT9.202e-3252.86[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_MOUSE9.202e-3252.86[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835658 ID=CF835658; Name=CF835658; organism=Citrus sinensis; type=EST; length=629bp
TTTTTTTTTTTTTTTTTAAAGAAAGCTGCCAATTTATTCCGTTAAAAATT
GACAGCAATTCATATCTTGTACAAATTGCCTTGACTTTGTTTAATAATTC
CATCAATTGAGTTACGAGAATTTTGATAACTGCTAAACTTTGATGTTGCA
TTGAAGTTCATGACAGGGCTCCCGTAAATCTCCTTAGAAGCAGTTGAAAT
TCAGGGTAAGGGTTCTTGAAAATCCCCCAAGCGCGACAAATGGAGATATG
CATCAGTTCCATATCCTTCCATGGAGATAATTTGCAAATCTCCTCCAAAA
TACCGAGCATACAAACGGCTTATTGGAAGCCCATATCCATACCCAGCCAT
TGTTCCCATGTCAGCTGCTAAATCAGTGTTTTCATCCAAAGGGTTTCTGG
CAGGGCTGTAAAGATATGTGAAAATTTTGGGAAGACCACTTCTTGGTATG
CCACCTCCCTCATCCGAAACCTTAATAGTAACATCCTCTAATCCATCGGC
AACTATTATTCGAATAGGAGGTGCAACTTTATCTGAGTCCATATAACGCT
CTTCAACAGCACGTAATGAGTTCTTAACCAACTCAAATACCATGAAATGC
AAGTGTGAAGGGACGTAAGGGAATGTAAA
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