CF835659

Overview
NameCF835659
Unique NameCF835659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6305 contig Csv1_Contig6305:726..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK_SCHPO ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC644.11c PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.857e-38
Identity = 82/141 (58.16%), Postives = 109/141 (77.30%), Query Frame = 2
Query:   14 YVPSHLHLMVFELVKNSLRA-VEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPL-DENTDLAADMGT--MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPL 424
            YV SHL+  VFE++KNSLRA VE   +DSD   PPI++IVA G ED+TIK+SDEGGGI R  +P +++Y+++TA   L D+  D+ +   T  MAG+G+GLP++RLY RYFGGDL++ISMEGYGTD Y+HL+RL +S EPL
Sbjct:  285 YVESHLNHAVFEILKNSLRATVEFHGVDSD-FFPPIKVIVAKGQEDITIKISDEGGGISRRNIPLVWSYMFTTASPTLTDDPHDIVSANSTTPMAGFGFGLPLARLYTRYFGGDLELISMEGYGTDVYIHLNRLCESAEPL 424          
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK_DROME ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.340e-35
Identity = 75/154 (48.70%), Postives = 104/154 (67.53%), Query Frame = 2
Query:   14 YVPSHLHLMVFELVKNSLRAVEERY-MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD-SQEPLP*ISTASKEIYGSPV 469
            YVPSHL+ M+FEL KNS+RAV E +  D++   PP+++ +  G ED+ +K+SD+GGGIPRS   ++F Y+YSTA  P   +         +AGYGYGLPISRLYARYF GD+ ++S EG+GTDA ++L  L D + E LP  +  S + Y + V
Sbjct:  242 YVPSHLYYMLFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIPRSQTDQLFKYMYSTAPQPSKSDLHTVP----LAGYGYGLPISRLYARYFHGDIVLLSCEGFGTDAIIYLKALSDEANELLPIFNKTSSKFYRATV 391          
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK_ASCSU ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.528e-34
Identity = 74/145 (51.03%), Postives = 104/145 (71.72%), Query Frame = 2
Query:   17 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASK 448
            VPSHL+ ++FEL KNS+RA  E +  +D+  PPI+++V  G ED++IK+SD GGG+ R+ L ++FTY+YSTA  P  + T        +AGYGYGLP+SRLYARYF GD+ ++SMEGYGTDA + L  +  ++ E LP  ST+S+
Sbjct:  237 VPSHLYHIMFELFKNSMRATVENH-GADEDLPPIKVMVVRGAEDLSIKISDRGGGVSRTILDRLFTYMYSTAPPPPRDGTQ-----PPLAGYGYGLPLSRLYARYFHGDMYLVSMEGYGTDAMIFLKAIPVEASEVLPIYSTSSR 375          
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK2_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.736e-33
Identity = 75/140 (53.57%), Postives = 101/140 (72.14%), Query Frame = 2
Query:   14 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 427
            YVPSHL+ M+FEL KN++RA  E + +S  + PPI+++VA G ED++IK+SD GGG+P   + ++F+Y+YSTA  P           GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  DS E LP
Sbjct:  240 YVPSHLYHMLFELFKNAMRATVESH-ESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTG------GTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372          
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK1_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.736e-33
Identity = 75/149 (50.34%), Postives = 103/149 (69.13%), Query Frame = 2
Query:   14 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASKEIY 457
            YVPSHL+ MVFEL KN++RA  E + D   V PPI++ V  G ED+T+K+SD GGG+P S + ++F Y+YSTA  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  +S E LP  + A+ + Y
Sbjct:  266 YVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQVHVTLGEEDLTVKMSDRGGGVPLSKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTESVERLPVYNKAAWKHY 409          
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK2_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 76/140 (54.29%), Postives = 100/140 (71.43%), Query Frame = 2
Query:   14 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 427
            YVPSHL+ M+FEL KN++RA  E + +S    PPI+I+VA G ED++IK+SD GGG+P   + ++F+Y+YSTA  P           GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  DS E LP
Sbjct:  240 YVPSHLYHMLFELFKNAMRATVESH-ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTG------GTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372          
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK2_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 76/140 (54.29%), Postives = 100/140 (71.43%), Query Frame = 2
Query:   14 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 427
            YVPSHL+ M+FEL KN++RA  E + +S    PPI+I+VA G ED++IK+SD GGG+P   + ++F+Y+YSTA  P           GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  DS E LP
Sbjct:  240 YVPSHLYHMLFELFKNAMRATVESH-ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRRIERLFSYMYSTAPTPQPGTG------GTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372          
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK4_SPETR ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Spermophilus tridecemlineatus GN=PDK4 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 80/175 (45.71%), Postives = 107/175 (61.14%), Query Frame = 2
Query:   14 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 538
            YVPSHLH M+FEL KN++RA  ER  +S     P+ +IV  G ED+TIK+SD GGG+P     ++F+Y+YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L  L            +S+ +   PV N    S F  YQ S  + D  I
Sbjct:  243 YVPSHLHHMLFELFKNAMRATVER-QESWPSLTPVEVIVVLGKEDLTIKISDRGGGVPLRITDRLFSYMYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKAL------------SSESVEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK4_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 80/175 (45.71%), Postives = 107/175 (61.14%), Query Frame = 2
Query:   14 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 538
            YVPSHLH M+FEL KN++RA  E + ++     PI +IV  G ED+TIK+SD GGG+P   + ++F+Y YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L  L            +S+ I   PV N    S F  YQ S  + D  I
Sbjct:  243 YVPSHLHHMLFELFKNAMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKAL------------SSESIEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CF835659 vs. ExPASy Swiss-Prot
Match: PDK1_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.854e-32
Identity = 74/149 (49.66%), Postives = 102/149 (68.46%), Query Frame = 2
Query:   14 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASKEIY 457
            YVPSHL+ MVFEL KN++RA  E + D   V PPI++ V  G ED+T+K+SD GGG+P   + ++F Y+YSTA  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  +S E LP  + A+ + Y
Sbjct:  266 YVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTESIERLPVYNKAAWKHY 409          
The following BLAST results are available for this feature:
BLAST of CF835659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PDK_SCHPO3.857e-3858.16[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK_DROME2.340e-3548.70[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK_ASCSU7.528e-3451.03[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK2_HUMAN3.736e-3353.57[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_MOUSE3.736e-3350.34[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_RAT6.373e-3354.29[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_MOUSE6.373e-3354.29[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_SPETR1.420e-3245.71[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_HUMAN1.420e-3245.71[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_RAT1.854e-3249.66[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835659 ID=CF835659; Name=CF835659; organism=Citrus sinensis; type=EST; length=629bp
TTTTACATTCCCTTACGTCCCTTCACACTTGCATCTCATGGTATTTGAGT
TGGTTAAGAACTCATTACGTGCTGTTGAAGAGCGTTATATGGACTCAGAT
AAAGTTGCACCTCCTATTCGAATAATAGTTGCCGATGGATTAGAGGATGT
TACTATTAAGGTTTCGGATGAGGGAGGTGGCATACCAAGAAGTGGTCTTC
CCAAAATTTTCACATATCTTTACAGCACTGCCAGAAACCCTCTGGATGAA
AACACTGATCTAGCAGCTGACATGGGAACAATGGCTGGGTATGGATATGG
GCTTCCAATAAGCCGTTTGTATGCTCGGTATTTTGGAGGAGATTTGCAAA
TTATCTCCATGGAAGGATATGGAACTGATGCATATCTCCATTTGTCGCGC
TTGGGGGATTCTCAAGAACCCTTACCCTGAATTTCAACTGCTTCTAAGGA
GATTTACGGGAGCCCTGTCATGAACTTCAATGCAACATCAAAGTTTAGCA
GTTATCAAAATTCTCGTAACTCAATTGATGGAATTATTAAACAAAGCTAT
ACAATTTGTACAAGATATGAATTGCTGTCAATTTTGGTCCTAATAAATTG
GCAGCTTTCTTGTAAAAAAAAAAAAAAAA
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