CF835666

Overview
NameCF835666
Unique NameCF835666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13849 contig Csv1_Contig13849:8..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCAT_ARATH (Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.439e-43
Identity = 84/109 (77.06%), Postives = 95/109 (87.16%), Query Frame = 2
Query:  392 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQII 718
            M D  KDL SGTVGGAAQL+ GHPFDTIKVKLQSQP P PGQ P+Y GA+DAVKQT+A+EG +GLYKGMGAPLATVAAFNA+LFTVRGQME LLRS+ G PLT++QQ +
Sbjct:    1 MADAWKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFNAVLFTVRGQMEGLLRSEAGVPLTISQQFV 109          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: DIF1_CAEEL (Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.784e-18
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 2
Query:  392 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQ 709
            M D+  +  +G VGG+  +I GHPFDT+KV++Q+ P P PG+ P++ GA+D VK+T++ EG   LYKGM APL  V+   A+ F      + L ++ P   +T  Q
Sbjct:    1 MSDVLLNFIAGGVGGSCTVIVGHPFDTVKVRIQTMPMPKPGEKPQFTGALDCVKRTVSKEGFFALYKGMAAPLVGVSPLFAVFFGGCAVGKWLQQTDPSQEMTFIQ 106          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCAT_RAT (Mitochondrial carnitine/acylcarnitine carrier protein OS=Rattus norvegicus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.184e-17
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQ 709
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G +D  ++T+  EG  GLY+GM AP+  V    A+ F   G  + L +  P   LT  Q
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTIDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKRLQQKSPEDELTYPQ 112          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCAT_MACFA (Mitochondrial carnitine/acylcarnitine carrier protein OS=Macaca fascicularis GN=SLC25A20 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.184e-17
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQ 709
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG RGLY+GM AP+  V    A+ F   G  + L +  P   L+  Q
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGIRGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQ 112          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCAT_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens GN=SLC25A20 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQ 709
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG  GLY+GM AP+  V    A+ F   G  + L +  P   L+  Q
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQ 112          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: COLT_DROME (Congested-like trachea protein OS=Drosophila melanogaster GN=colt PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 45/101 (44.55%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQ 709
            K   +G  GG   ++ GHP DTIKV+LQ+ P P PG+ P Y G  D   +TI  EG RGLYKGM APL  VA   A+ F      + L +    A LT  Q
Sbjct:   17 KSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYALGKRLQQRGEDAKLTYPQ 117          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCAT_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein OS=Mus musculus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQ 709
            K+L +G  GG   +  GHP DT+KV+LQ+QP  L GQPP Y+G +D  ++T+  EG  GLY+GM AP+  V    A+ F   G  + L +  P   L+  Q
Sbjct:   12 KNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLSGQPPMYSGTLDCFRKTLMREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKSPEDELSYPQ 112          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.346e-15
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAP 694
            KD+ +G++GG  Q+  GHP DTIKV+LQ+Q        P Y+G MD +K+TI+ EG  GLYKG+ +PL  ++  N+++F   GQ + L++     P
Sbjct:   15 KDIVAGSIGGVGQVFTGHPLDTIKVRLQTQSVG----NPIYSGTMDCLKKTISQEGFAGLYKGVASPLVGLSIMNSVMFLAYGQSKTLIQKLSDNP 106          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCFS_DICDI (Mitochondrial substrate carrier family protein S OS=Dictyostelium discoideum GN=mcfS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.998e-15
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQ 709
            KD  +GTV GAA L  GHPFDTI+V+LQ+   P+        G M+  + TI  EG  GLYKG+ +PL  +    A+LF   GQM+ LL+     PLTV Q
Sbjct:    8 KDSIAGTVAGAACLFTGHPFDTIRVRLQTSNTPI--------GIMECFRNTIKYEGFSGLYKGVTSPLFGMMFETAVLFAGYGQMKVLLQKDENTPLTVGQ 100          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCATL_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Homo sapiens GN=SLC25A29 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  401 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQ-MEALLRSQP------GAPLTVNQQIIC 721
            +A D  +G  GG A ++ GHPFDT+KV+LQ Q      + P+Y G +   K  I  E   GLYKG+G+PL  +   NAL+F V+G  + AL    P      GA     Q +IC
Sbjct:    1 MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSV----EKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVIC 110          
The following BLAST results are available for this feature:
BLAST of CF835666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MCAT_ARATH4.439e-4377.06Mitochondrial carnitine/acylcarnitine carrier-like... [more]
DIF1_CAEEL3.784e-1841.51Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 P... [more]
MCAT_RAT4.184e-1743.56Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_MACFA4.184e-1743.56Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_HUMAN2.076e-1642.57Mitochondrial carnitine/acylcarnitine carrier prot... [more]
COLT_DROME2.712e-1644.55Congested-like trachea protein OS=Drosophila melan... [more]
MCAT_MOUSE7.890e-1641.58Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCFG_DICDI1.346e-1541.67Mitochondrial substrate carrier family protein G O... [more]
MCFS_DICDI2.998e-1545.54Mitochondrial substrate carrier family protein S O... [more]
MCATL_HUMAN2.149e-1339.47Mitochondrial carnitine/acylcarnitine carrier prot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835666 ID=CF835666; Name=CF835666; organism=Citrus sinensis; type=EST; length=777bp
GAGTGGTTGGTCCTTGTCCAGTTAACCACTCTCATGTGGCTGTGCCTGTA
AATCTGCTTCAAGACTCATTTCTTTATTTTTCTTTCCTTTTATTTTAAGA
TTGTCACAGCCTCCAATATCCCATTACCCACCTCCTTCCTTTTTAGTACC
TTTTTTTTCTATTGTCATTCCTTTTTTTCTCTCATTAAAAAAGTAAACCC
GAAGAAAAAATAAGAAAAATAAAACCCAGTTCCTTTTTCCTGGCGTTTTT
TTAATTTGTATACCCTCCTTTTAATCTAATACTTTGTGTTTTCTCAAATT
GAATCATTTGAGGGAAACAACTTTTCTCCACTAGATTCGGTTGCCGTTCT
CGGGGCTCTGCTTACTCCGGTGTCAGTGAGAATCGGCTCTGATGGGAGAC
ATAGCCAAGGATCTATTTTCTGGGACTGTTGGAGGGGCAGCACAATTAAT
ATGTGGGCACCCATTTGATACCATCAAGGTCAAGCTTCAAAGCCAGCCTG
CTCCACTCCCTGGCCAACCTCCCAAGTATGCTGGTGCCATGGATGCTGTC
AAGCAAACCATAGCTGCCGAAGGGCCAAGGGGCTTGTACAAAGGTATGGG
AGCTCCACTAGCTACTGTTGCCGCTTTTAATGCCCTCCTATTTACAGTGA
GAGGACAAATGGAGGCACTGCTCAGATCTCAACCTGGTGCCCCACTAACC
GTCAACCAGCAGATTATTTGCGGGGCTGGGGCTGGTGTTGCTGTTTCTTT
TTCTGCTGCCCCACAGAATTGATCAAA
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