CF835673

Overview
NameCF835673
Unique NameCF835673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13849 contig Csv1_Contig13849:8..586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835673 vs. ExPASy Swiss-Prot
Match: MCAT_ARATH (Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.045e-20
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 2
Query:  392 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEG 574
            M D  KDL SGTVGGAAQL+ GHPFDTIKVKLQSQP P PGQ P+Y GA+DAVKQT+A+EG
Sbjct:    1 MADAWKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEG 61          
BLAST of CF835673 vs. ExPASy Swiss-Prot
Match: DIF1_CAEEL (Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.142e-13
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  392 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEG 574
            M D+  +  +G VGG+  +I GHPFDT+KV++Q+ P P PG+ P++ GA+D VK+T++ EG
Sbjct:    1 MSDVLLNFIAGGVGGSCTVIVGHPFDTVKVRIQTMPMPKPGEKPQFTGALDCVKRTVSKEG 61          
BLAST of CF835673 vs. ExPASy Swiss-Prot
Match: MCAT_RAT (Mitochondrial carnitine/acylcarnitine carrier protein OS=Rattus norvegicus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEG 574
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G +D  ++T+  EG
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTIDCFRKTLFREG 67          
BLAST of CF835673 vs. ExPASy Swiss-Prot
Match: MCAT_MACFA (Mitochondrial carnitine/acylcarnitine carrier protein OS=Macaca fascicularis GN=SLC25A20 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEG 574
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREG 67          
BLAST of CF835673 vs. ExPASy Swiss-Prot
Match: MCAT_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens GN=SLC25A20 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEG 574
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREG 67          
The following BLAST results are available for this feature:
BLAST of CF835673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MCAT_ARATH1.045e-2077.05Mitochondrial carnitine/acylcarnitine carrier-like... [more]
DIF1_CAEEL6.142e-1347.54Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 P... [more]
MCAT_RAT5.749e-1150.00Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_MACFA7.508e-1150.00Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_HUMAN7.508e-1150.00Mitochondrial carnitine/acylcarnitine carrier prot... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01K23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835673 ID=CF835673; Name=CF835673; organism=Citrus sinensis; type=EST; length=577bp
GAGTGGTTGGTTTTTGTCCAGTTAACCACTCTCATGTGGCTGTGCCTGTA
AATCTGCTTCAAGACTCATTTCTTTATTTTTCTTTCCTTTTATTTTAAGA
TTGTCACAGCCTCCAATATCCCATTACCCACCTCCTTCCTTTTTAGTACC
TTTTTTTTCTATTGTCATTCCTTTTTTTCTCTCATTAAAAAAGTAAACCC
GAAGAAAAAATAAGAAAAATAAAACCCAGTTCCTTTTTCCTGGCGTTTTT
TTAATTTGTATACCCTCCTTTTAATCTAATACTTTGTGTTTTCTCAAATT
GAATCATTTGAGGGAAACAACTTTTCTCCACTAGATTCGGTTGCCGTTCT
CGGGGCTCTGCTTACTCCGGTGTCAGTGAGAATCGGCTCTGATGGGAGAC
ATAGCCAAGGATCTATTTTCTGGGACTGTTGGAGGGGCAGCACAATTAAT
ATGTGGGCACCCATTTGATACCATCAAGGTCAAGCTTCAAAGCCAGCCTG
CTCCACTCCCTGGCCAACCTCCCAAGTATGCTGGTGCCATGGATGCTGTC
AAGCAAACCATAGCTGCCGAAGGGCCA
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