CF835677

Overview
NameCF835677
Unique NameCF835677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2035 contig Csv1_Contig2035:58..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.251e-50
Identity = 105/126 (83.33%), Postives = 107/126 (84.92%), Query Frame = -1
Query:  175 PKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 552
            PKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK+GKGKG+IGSASQEF
Sbjct:   14 PKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.360e-49
Identity = 103/126 (81.75%), Postives = 105/126 (83.33%), Query Frame = -1
Query:  175 PKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 552
            PKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF
Sbjct:   17 PKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.257e-49
Identity = 102/126 (80.95%), Postives = 105/126 (83.33%), Query Frame = -1
Query:  175 PKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 552
            PKA+KSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF
Sbjct:   17 PKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.592e-48
Identity = 100/125 (80.00%), Postives = 104/125 (83.20%), Query Frame = -1
Query:  175 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 549
            K++KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLPKK GK KG+IGSASQEF
Sbjct:   14 KSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.870e-46
Identity = 99/125 (79.20%), Postives = 102/125 (81.60%), Query Frame = -1
Query:  175 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 549
            K SKSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF
Sbjct:   14 KGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.870e-46
Identity = 99/125 (79.20%), Postives = 102/125 (81.60%), Query Frame = -1
Query:  175 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 549
            K SKSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF
Sbjct:   14 KGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.651e-44
Identity = 96/125 (76.80%), Postives = 101/125 (80.80%), Query Frame = -1
Query:  175 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 549
            K +K+VSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF
Sbjct:   14 KTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.651e-44
Identity = 96/125 (76.80%), Postives = 101/125 (80.80%), Query Frame = -1
Query:  175 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 549
            K +K+VSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF
Sbjct:   14 KTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.214e-39
Identity = 86/114 (75.44%), Postives = 87/114 (76.32%), Query Frame = -1
Query:  205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546
            A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   13 AKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.442e-39
Identity = 85/114 (74.56%), Postives = 87/114 (76.32%), Query Frame = -1
Query:  205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASK 126          
The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AX_CICAR1.251e-5083.33Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH2.360e-4981.75Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH5.257e-4980.95Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AX_PICAB7.592e-4880.00Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ORYSJ1.870e-4679.20Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI1.870e-4679.20Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ6.651e-4476.80Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI6.651e-4476.80Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A3_ARATH2.214e-3975.44Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A6_ARATH6.442e-3974.56Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTCTTTTAAATAACATGTGGAAAGCAATGGAATAATCTCAT
CACTTTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAG
AAAAAAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGT
AAAATTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGT
CACCCTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTG
GGTAAAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAA
TTCCTCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGT
TCTTCTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTCAGCA
GCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCTCCGGCGCCGAC
TCGCTCAGCGTACTTTCCGGCCTTCAAAAACCTAGCGATCCTGCCCACCG
GGAACTGAAGGCCCGCCTTATGCGACCGCGAGACCGATTTCGAAGCCTTC
GGCTTACCCCTGCCGCCCTTCGTTGACCCTCCAGTTGAACTCATTCTTAT
TACAGAAAAACCCTAACCCTAGATTTCGGTTTGGTTTGAAGCGATTGAAA
G
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