CF835682

Overview
NameCF835682
Unique NameCF835682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9892 contig Csv1_Contig9892:140..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835682 vs. ExPASy Swiss-Prot
Match: CFI_EUSGR (Chalcone--flavonone isomerase OS=Eustoma grandiflorum GN=CHI PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 50/169 (29.59%), Postives = 78/169 (46.15%), Query Frame = -1
Query:  160 GHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQYGVQLESAVRARLXXXXXXXXXXXXXXXXXXEFFQSKYFKK-DSVIAYHFPATSPTAEIVFTSEGKEDSKIKVENANVVEMIKKWYLGGARGVSP 660
            G G+  +EI    +KFTAIG+YLD   +  L  +WKGK    LA   DFF  +++ P EKF ++ +I  + G QY  ++     A+                   + F+ + F   DS++  H P  S T       +  E S   +EN  + E + +  + G +GVSP
Sbjct:   34 GAGVRGLEIGGNFVKFTAIGIYLDETAIPWLAGKWKGKTAEELADSVDFFADIITGPFEKFTQVTLILPLTGQQYSGKVSENCTAQWKAAGVYTPADGKAIEKFLQVFEPQSFSPGDSILFMHSP-ESLTISFGKAGDIPETSNAVIENKKLSEAVIESVI-GEKGVSP 200          
BLAST of CF835682 vs. ExPASy Swiss-Prot
Match: CFI_ALLCE (Chalcone--flavonone isomerase OS=Allium cepa GN=CHI PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 51/171 (29.82%), Postives = 80/171 (46.78%), Query Frame = -1
Query:  160 GHGLTDIEIHFLQIKFTAIGVYLDPEILSHL-QQWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQYGVQLESAVRARLXXXXXXXXXXXXXXXXXXEFFQSKYFKKDSVIAY-HFPATSPTAEIVFTSEG--KEDSKIKVENANVVEMIKKWYLGGARGVSP 660
            G G+  +EI    I FTAIG+YL+ + +  L  +WKGK G  LA   DFF  + + P EKF  + +I  + G QY  ++     A                    + F+ + F   S I + H P  S T +I F+ +G   +D  + +EN  + + + +  + G  GVSP
Sbjct:   31 GAGVRGLEIGGKFIAFTAIGIYLETDSIPFLADKWKGKTGEELAGSLDFFRDICTGPFEKFTNVTMILPLTGEQYSEKVTENCVAYWKAIGIYTDAEASAVDKFKQAFKPESFPPGSSILFTHTP--SGTLKIAFSKDGSVSKDEGVLIENKALTQAVLESII-GEHGVSP 198          
The following BLAST results are available for this feature:
BLAST of CF835682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CFI_EUSGR2.588e-1129.59Chalcone--flavonone isomerase OS=Eustoma grandiflo... [more]
CFI_ALLCE9.836e-1129.82Chalcone--flavonone isomerase OS=Allium cepa GN=CH... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01L05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835682 ID=CF835682; Name=CF835682; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTTTTTTTTGCGGGGTAAACACGTCATTCAAATTCCACCATTT
TACAGCAATTCCAAAACCCAAGTGAAGAAGCACTTTTATTAGAAAGCGCA
GAGCTGCTTCATTTTGATAACTCAGCTGAGAGAGTATTGGCTAGAGATGA
TGTTGTTGTAGGAGACACTCCCCTTGCTCCACCCAAGTACCATTTCTTGA
TCATCTCAACCACATTCGCATTCTCCACTTTGATTTTTGAGTCCTCCTTT
CCTTCACTTGTAAACACTATCTCAGCAGTAGGGGATGTTGCCGGAAAATG
ATAAGCAATCACAGAGTCCTTCTTAAAATACTTGGATTGGAAGAATTCAA
CGATTTTCTCAAGGGCAGATTCTTCCTCTTCTTCATATTTGTCAGCTTCG
GCCAATCTGGCCCTCACCGCACTTTCTAACTGAACCCCATATTGTGACCC
CTTGATCTCCTTGATCACAACAATTCTAAAAAATTTCTCTACTGGAGCAG
AGACAAGAGCATCAAAGAAGTCATCATCTTGTGCAAGGGAACTTCCCTGT
TTGCCCTTCCACTGTTGCAAGTGACTCAAAATTTCAGGATCCAAGTAGAC
TCCAATTGCCGTGAACTTGATTTGGAGAAAGTGTATCTCAATGTCTGTTA
AACCATGACC
back to top