CF835689

Overview
NameCF835689
Unique NameCF835689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.693e-33
Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = -1
Query:  311 PAMAPGALV---GWGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 730
            PA+ PG+L+        + ++K AS GCDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V +WTC    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  160 PAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWTCDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.212e-33
Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = -1
Query:  311 PAMAPGALV---GWGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 730
            PA+ PG+L+        + ++K AS GCDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  160 PAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 2.212e-33
Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = -1
Query:  311 PAMAPGALV---GWGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 730
            PA+ PG+L+        + ++K AS GCDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  160 PAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = -1
Query:  311 PAMAPGALV---GWGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 730
            PA+ PG+L+        + +++ AS GCDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC       W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = -1
Query:  308 PAMAPGALVGWG---LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA  P +LV      +  P++++ +  CDN +K++K     W +D    L+ H DWVR VAWAPN+GLP S IAS SQD +V++WT  + G  W G+ L  F   VW VSWS+ GN+LAV+  +N VTLWKE VD EW+ +S VE
Sbjct:  158 PAAIPTSLVNSANTIIPAPIKRIVTGSCDNLIKIFKNVEDKWILD--KQLEDHKDWVRDVAWAPNIGLPYSKIASCSQDRSVIVWTQDENG-VWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKEGVDSEWKLISHVE 299          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 68/167 (40.72%), Postives = 92/167 (55.09%), Query Frame = -1
Query:  308 PAMAPGALVGW------------GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-------------KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVE 730
            PA+ PG+L+              G    V++ AS GCDNTVK+W+      +     ALQ HSDWVR VA+APN+GLP+S +A+ASQD TV+IWT       W    L               F   VW VSWS++GN+LAV+  +  +TLWKE + G W+ VS ++
Sbjct:  197 PAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIWEFSQEANRFVEVEALQGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAGAGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWECVSEMD 363          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_YARLI (Protein transport protein SEC13 OS=Yarrowia lipolytica GN=SEC13 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 69/149 (46.31%), Postives = 92/149 (61.74%), Query Frame = -1
Query:  308 APGALVGWGLLDPVQ-------KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 721
            AP A+ G  L+ P+        ++ + GCDN VK+WK             L  H DWVR VAW+ ++ L KS IASASQD TV++WT  +EG Q W+ ++L+D   P  VW VSWSL+GN+LAV+  +N VTLWKE + GEW+   VVE
Sbjct:  153 APPAVSG-SLIQPINGKASNNIRIVTGGCDNLVKIWKYDPSSKTYVIEETLSGHKDWVRDVAWSSSV-LSKSYIASASQDKTVIVWT--QEGNQPWKKKLLQDIPFPDVVWKVSWSLSGNVLAVSGGDNKVTLWKENLTGEWESAGVVE 297          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_MAGGR (Protein transport protein SEC13 OS=Magnaporthe grisea GN=SEC13 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.895e-25
Identity = 66/146 (45.21%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  308 PAMAPGALVGWGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPA--LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            P+ APG+++        Q+   + G DNT+K+W       +  C     L  H+DWV  V W+P + L KS IASASQD TV IWT        W+ RVLK+F T VW VSWSL+GN+LAV+  +N VTLWKE + GEW  V+ +E
Sbjct:  151 PSTAPGSIISTNATPAAQRRFVTGGSDNTLKIWSWDAASAQYRCEEGGVLSGHTDWVLDVDWSPTV-LQKSYIASASQDRTVRIWTSDSSNPGVWQSRVLKEFDTTVWRVSWSLSGNVLAVSSGDNKVTLWKENLKGEWACVNSLE 295          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_PICPG (Protein transport protein SEC13 OS=Pichia pastoris (strain GS115) GN=SEC13 PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.451e-24
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = -1
Query:  308 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 694
            L D  ++  S GCDN VK+W+  +         A Q HSDWVR VAW+P+  L KS IA+ASQD TV+IWT   +  +WE + L   K P   W  SWSL+GN+LA++  +N VTLWKE + G+W+    V+
Sbjct:  158 LPDNTRRFVSGGCDNLVKIWRYDDAAKTFIEEEAFQGHSDWVRDVAWSPSR-LSKSYIATASQDRTVLIWTKDGKSNKWEKQPLTKEKFPDVCWRASWSLSGNVLAISGGDNKVTLWKENIQGKWESAGEVD 288          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 62/144 (43.06%), Postives = 89/144 (61.81%), Query Frame = -1
Query:  308 PAMAPGALVGWGL-LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA +PG+LV     +   ++  + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV +WT  A    QW  +VL +F   +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  167 PAASPGSLVSSNPGIGQQRRFVTGGSDNLLKIWDYNPETKTYNATQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRVWTADASNPGQWTSQVL-EFDNVLWRVSWSPSGNILAVSGGDNKVSLWKENLRGQWEKVKDIE 308          
The following BLAST results are available for this feature:
BLAST of CF835689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SEC13_BOVIN1.693e-3350.68Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_RAT2.212e-3350.68Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE2.212e-3350.68Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN1.434e-3250.00Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_DICDI6.659e-3046.90Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA3.420e-2640.72Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_YARLI9.951e-2646.31Protein transport protein SEC13 OS=Yarrowia lipoly... [more]
SEC13_MAGGR2.895e-2545.21Protein transport protein SEC13 OS=Magnaporthe gri... [more]
SEC13_PICPG2.451e-2445.45Protein transport protein SEC13 OS=Pichia pastoris... [more]
SEC13_EMENI1.589e-2343.06Protein transport protein sec13 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835689 ID=CF835689; Name=CF835689; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTTTGCACAAATCCTTGAAATCACCTTTAAAGGCCAA
AGAGTTCATATGTAATTTAACAGAAACCTTGGCAGTCACAAATACAGACG
TATGGATGGAGATTAAGACACCATCATTTGTTTCTGAATCTGGCAAGAAA
GAATAACAACTAACCAAATACAAATTAAGTATTCAAACAAAATCAATCCA
ACCCAAAAAAAAACTAAACCAGGTGTAAGAAAGGCTACTTCCAATAAGTC
CAAAAGAGAACACAATGATTGTGAAAGGGTAAGTAGGAAGACACCTTATG
TCTGTGGCTCGACTACACTCACTTGTTGCCACTCACCATCAACAGCTTCC
TTCCACAATGTCACATTATTTGCATCAGCCACAGCCAACAAATTTCCAGT
CAGTGACCACGAAACACTCCAAACTGGTGTCTTAAAATCCTTCAAAACTC
GACCCTCCCATTGCTCCCCTTCCTTGGCACAGGTCCAAATAACAACTGTC
CCATCCTGTGATGCACTTGCAATTGTGGATTTTGGAAGACCCAAGTTGGG
TGCCCATGCCACGCTCCGCACCCAATCACTGTGCATCTGAAGGGCAGGGA
AGCAATCCATCTTCCAAATCCCATTATACATCTTCCACACCTTTACAGTA
TTATCACAACCACAAGAAGCCAATTTCTGAACAGGATCCAGTAAGCCCCA
TCCAACTAAAGCACCAGGAGCCATTGCCGG
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