CF835690

Overview
NameCF835690
Unique NameCF835690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3944 contig Csv1_Contig3944:39..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.830e-47
Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = 3
Query:  204 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG 641
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.830e-47
Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = 3
Query:  204 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG 641
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 1.075e-46
Identity = 83/146 (56.85%), Postives = 105/146 (71.92%), Query Frame = 3
Query:  204 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG 641
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIW+E N   W ++H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.396e-46
Identity = 84/146 (57.53%), Postives = 103/146 (70.55%), Query Frame = 3
Query:  204 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG 641
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T T  G W+  +I+ AH +G
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIG 152          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.242e-44
Identity = 82/152 (53.95%), Postives = 102/152 (67.11%), Query Frame = 3
Query:  189 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGV 644
            M  Q +++GHED VHD   D+YGK LAT SSD  IKI  +     QHL  L+GH GPVWQVAWAHPKFG ILAS SYD +VI+WKE   N W+  H +  H+ SVNSI+WAPHE GLSLAC SSDG++++     +  W+  +  Q   +GV
Sbjct:    1 MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQVAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGV 151          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.230e-42
Identity = 90/172 (52.33%), Postives = 107/172 (62.21%), Query Frame = 3
Query:  198 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE-------------GNQN----------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG 641
            + IET HED VHD  +DFYGKRLAT SSD ++K+  + N      A TL GH+GPVWQVAWAHP FG ILASCSYDG+V+IWK+             G+Q+           WT+      H +SVNSI+WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG
Sbjct:   19 KNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVAWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHTLHTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVG 189          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_PICGU (Protein transport protein SEC13 OS=Pichia guilliermondii GN=SEC13 PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.958e-41
Identity = 80/148 (54.05%), Postives = 100/148 (67.57%), Query Frame = 3
Query:  204 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGV 644
            I   H++ +HD  +D+YGKRLAT SSD +IKI  +  + +  L  TL GH GPVWQVAWAHPKFGSILASCSYDG+V++WKE     W+       H++SVNS++WAPHELG  L C SSDG +SV     D G  T  I +AH +GV
Sbjct:    4 IANAHDELIHDAVLDYYGKRLATCSSDKTIKIFEVEGTENYQLTETLVGHEGPVWQVAWAHPKFGSILASCSYDGKVLVWKESPDRSWSIISEHKVHQASVNSVSWAPHELGAVLLCTSSDGRVSVVDFN-DDGTSTHIIFEAHKIGV 150          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.817e-41
Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 3
Query:  204 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG 641
            ++T H+D +HD  +D+YGKRLAT SSD +IK+  + N+    L TL+GH GPVWQ+ WAHPKFG+ILAS SYDG VI+W+E     W++      H++SVN+++WAPHE G  LAC SSDG +SV     DG  D TRI  AH  G
Sbjct:    4 VDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRE-TGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCD-TRIFTAHEPG 147          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_LODEL (Protein transport protein SEC13 OS=Lodderomyces elongisporus GN=SEC13 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.565e-40
Identity = 82/149 (55.03%), Postives = 100/149 (67.11%), Query Frame = 3
Query:  204 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE-GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGV 644
            I   HED +HD  +D+YGKRLAT SSD +IKI  +  + +  L ATL GH GP+WQVAWAHPKFGSILASCSYDG+V+IWKE  +   W+       H++SVNS++WAPHELG  L C SSDG +SV     DG       D AH +GV
Sbjct:    4 IGNAHEDLIHDAVLDYYGKRLATCSSDKTIKIYDIEGTENYKLTATLTGHEGPIWQVAWAHPKFGSILASCSYDGKVLIWKEQQDTQQWSIIAEHTIHQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFNDDGTTSHVIFD-AHAIGV 151          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.749e-40
Identity = 79/150 (52.67%), Postives = 104/150 (69.33%), Query Frame = 3
Query:  210 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-----NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGV 644
            +GH+D +HD  MD+YG+RLAT SSD +IKI  L   + + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +      + W++   F+ H +SVN ++WAPHELG  LAC SSDG++SV     D  W T +I  AH +GV
Sbjct:    8 SGHDDMIHDAGMDYYGRRLATCSSDKTIKIFELEGDSHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACASSDGHVSVL-EFRDNSW-THQIFHAHGMGV 155          
The following BLAST results are available for this feature:
BLAST of CF835690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SEC13_RAT2.830e-4757.53Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE2.830e-4757.53Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN1.075e-4656.85Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_BOVIN2.396e-4657.53Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_DICDI2.242e-4453.95Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA1.230e-4252.33Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_PICGU3.958e-4154.05Protein transport protein SEC13 OS=Pichia guillier... [more]
SEC13_SCHPO8.817e-4152.74Protein transport protein sec13 OS=Schizosaccharom... [more]
SEC13_LODEL2.565e-4055.03Protein transport protein SEC13 OS=Lodderomyces el... [more]
SEC13_COCIM9.749e-4052.67Protein transport protein SEC13 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835690 ID=CF835690; Name=CF835690; organism=Citrus sinensis; type=EST; length=648bp
TTTTTAGTTCCGATACCACGCAAAAAGCCTAAAAACGTTTATTACTCTCA
GCCGGTGCTACTGGTCGGTCTTCGAATCCGCTCCTCTCTTAAGAAATTTG
GAGCTGAGAACATAAGATAAAAAGGAGCTACGAACTAGTGATCAAGGAGT
TGAAGTTTGAGGGGTAAAATAAAGAAATATAAAGTAAGATGCCTGCACAA
AAAATTGAAACTGGTCATGAAGACACTGTCCATGATGTAGCCATGGATTT
CTATGGAAAACGTTTAGCCACAGCTTCGTCTGACTCCAGCATTAAGATAA
TTGGTTTAAGCAACTCTGCTTCCCAGCACCTTGCTACATTGAAAGGCCAT
AGAGGTCCTGTTTGGCAAGTTGCATGGGCACACCCCAAGTTTGGGTCAAT
CCTTGCTTCCTGTTCCTATGATGGCCAAGTTATTATCTGGAAGGAAGGTA
ATCAAAATGATTGGACACAGGCTCATACTTTTAATGATCATAAATCATCT
GTCAACTCCATTGCGTGGGCACCTCATGAACTTGGTCTCTCCTTGGCTTG
TGGATCTTCTGATGGGAACATCTCAGTCTTTACTGCTACAGCTGATGGTG
GCTGGGATACTACCAGGATAGACCAGGCCCATCCAGTCGGAGTAACAT
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