CF835699

Overview
NameCF835699
Unique NameCF835699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:32..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.466e-46
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 328
            +TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.915e-46
Identity = 88/92 (95.65%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 328
            +TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.621e-45
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 325
            +TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.612e-45
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 328
            +TKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.341e-44
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 325
            + KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 5.766e-43
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 325
            + KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 325
            + KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.065e-37
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 325
            + KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.868e-34
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 328
            + KRTKK GIVGKYGTRYGASLRK +KKME++QHSKY C+FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_DICDI (60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.020e-31
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 2
Query:   53 LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 316
            + KRTKK G+VGKYGTRYGASLRKQ+KKME++QH  Y C FCGK AV+R +VGIW C  C KV AGGA+T++TA+  TVRSTIRRLRE
Sbjct:    1 MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRE 88          
The following BLAST results are available for this feature:
BLAST of CF835699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_GOSHI1.466e-4697.8360S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_ORYSJ1.915e-4695.6560S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_PSEMZ1.621e-4595.6060S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH3.612e-4593.48Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH2.341e-4492.3160S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA5.766e-4391.3060S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU9.527e-3879.1260S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA8.065e-3778.0260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST2.868e-3472.8360S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL37A_DICDI1.020e-3170.4560S ribosomal protein L37a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835699 ID=CF835699; Name=CF835699; organism=Citrus sinensis; type=EST; length=580bp
CTCAACAGCCCCTTTTTGTTGAAGAGCTACAGACCTTCGCTCCAACGCCA
CACTGACCAAGCGTACGAAGAAGGCTGGAATCGTTGGAAAGTATGGTACC
CGTTATGGTGCCAGTTTGAGGAAGCAAATTAAGAAGATGGAGGTTAGTCA
GCATAGCAAATATTTCTGCGAATTTTGCGGGAAGTATGCGGTGAAGAGGA
AAGCTGTTGGCATTTGGGGCTGCAAGGACTGTGGGAAAGTCAAGGCAGGC
GGTGCCTACACTTTGAACACTGCTAGTGCTGTGACTGTGAGGAGCACAAT
CCGTAGGTTGAGGGAGCAAACTGAAAGCTGAGCTTGCCACCATTGGCTTA
CTCCCGTGTCTTAGGTCGTTTGATCTTTAGTTTCGGATACAACCTTAAAT
CATTTTTGATGTTGCTTTATTTCTAGATGCAAAACAATTGGTTGTTGGAA
CATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCGCTATTT
TTCCTATGAAATTATGTTATCTAGTGGGTTTTCCTATGAAATTATGTTAT
CTAGTGGGTTGATTAAAAAAAAAAAAAAAA
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