CF835718
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3) HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47 Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = -1 Query: 361 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 705 LDNDEEKVGADIVKRAL YPLKLIAKN GVNGSVVSEKVLS N K+G NAATG YEDLMAAGIIDP KVVRCCLEHA+S AKTFLMSDC VEIKEPEP +P GNPM NSGYGY Sbjct: 487 LDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 184.496 bits (467), Expect = 4.820e-46 Identity = 98/114 (85.96%), Postives = 98/114 (85.96%), Query Frame = -1 Query: 364 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 705 L NDEEKVGADIVKRAL YPLKLIAKN GVNGSVVSEKVLS N KYG NAATG YEDLMAAGIIDP KVVRCCLEHASS AKTFLMSDC VEIKEPE A P GNPM NSGYG Sbjct: 481 LANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESA-PVGNPMDNSGYG 593
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.924e-43 Identity = 90/115 (78.26%), Postives = 98/115 (85.22%), Query Frame = -1 Query: 361 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 705 L+NDE+KVGA+IV+RALCYPLKLIAKN GVNGSVV+EKVLS N K+G NAATG YEDLMAAGIIDP KVVRCCLEHA+S AKTFL SD VEIKEPE A P NPM NSG+GY Sbjct: 386 LENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPE-AAPLANPMDNSGFGY 499
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.229e-41 Identity = 87/100 (87.00%), Postives = 89/100 (89.00%), Query Frame = -1 Query: 406 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEP 705 LDNDEEKVGADIVKRAL YPLKLIAKN GVNGSVVSEKVLS N K+G NAATG YEDLMAAGIIDP KVVRCCLEHA+S AKTFLMSDC VEIKEPEP Sbjct: 487 LDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP 586
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26 Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = -1 Query: 388 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKY-GSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI----KEPEPAMPGGN 705 L N+E+K+GADI+KRAL YP+KLIA N G NGSVV ++V+ + Y G NAAT +EDLM AGIIDP KVVRC LE+A S AKTFL++D EI K P PA GG+ Sbjct: 148 LSNEEQKMGADIIKRALSYPIKLIANNAGTNGSVVMQRVMDNIDQPYYGYNAATDTFEDLMEAGIIDPTKVVRCSLENAVSVAKTFLLADVVVTEIPEKEKAPAPAAGGGD 258
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25 Identity = 60/111 (54.05%), Postives = 79/111 (71.17%), Query Frame = -1 Query: 394 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHK-YGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKE------PEPAMPG 705 + + E+++GADI+KRALCYP+KLIA+N GVNGSVV +V+ + YG NAAT ++E+LM GIIDP KVVRC +E+A S AKTFL++D E+KE P P PG Sbjct: 317 MTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVAKTFLLADVVVTELKEIEAGAKPNPVAPG 427
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_COXBU (60 kDa chaperonin OS=Coxiella burnetii GN=groL PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21 Identity = 49/113 (43.36%), Postives = 74/113 (65.49%), Query Frame = -1 Query: 370 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 705 ++N++++VG +I +RA+ YPL I KN GV +VV++KVL+ + YG NAATG Y D++ GI+DP KV R L++A+S A + ++C E K+ E +MPGG M G Sbjct: 431 VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_COXBR (60 kDa chaperonin OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=groL PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21 Identity = 49/113 (43.36%), Postives = 74/113 (65.49%), Query Frame = -1 Query: 370 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 705 ++N++++VG +I +RA+ YPL I KN GV +VV++KVL+ + YG NAATG Y D++ GI+DP KV R L++A+S A + ++C E K+ E +MPGG M G Sbjct: 431 VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_COXBN (60 kDa chaperonin OS=Coxiella burnetii (strain Dugway 5J108-111) GN=groL PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21 Identity = 49/113 (43.36%), Postives = 74/113 (65.49%), Query Frame = -1 Query: 370 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 705 ++N++++VG +I +RA+ YPL I KN GV +VV++KVL+ + YG NAATG Y D++ GI+DP KV R L++A+S A + ++C E K+ E +MPGG M G Sbjct: 431 VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_COXB2 (60 kDa chaperonin OS=Coxiella burnetii (strain CbuG_Q212) GN=groL PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21 Identity = 49/113 (43.36%), Postives = 74/113 (65.49%), Query Frame = -1 Query: 370 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 705 ++N++++VG +I +RA+ YPL I KN GV +VV++KVL+ + YG NAATG Y D++ GI+DP KV R L++A+S A + ++C E K+ E +MPGG M G Sbjct: 431 VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543 The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bpback to top |