CF835731

Overview
NameCF835731
Unique NameCF835731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835731 vs. ExPASy Swiss-Prot
Match: TTC37_HUMAN (Tetratricopeptide repeat protein 37 OS=Homo sapiens GN=TTC37 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 3
Query:   84 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFKKGVEQVQLALKISSENVSAHDGLASGLLGLAKQCI 449
            A WA+ R G   L   + S+AV  LQ A+R  P   + WE+LG AY   G ++ A+KS+ +A EL+  SI+ + +   I  +LG +K+ V Q Q+ +K   + V A  GL    L +AK  +
Sbjct:  563 AKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKAAL 684          
BLAST of CF835731 vs. ExPASy Swiss-Prot
Match: TTC37_XENLA (Tetratricopeptide repeat protein 37 OS=Xenopus laevis GN=ttc37 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12
Identity = 44/123 (35.77%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   84 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFKKGVEQVQLALKISSENVSAHDGLASGLLGLAKQCIN 452
            A WA+ R G   L   + S++V  L  A+R  P   + WE LG AY   G ++ A+KS+ +A EL+  SI+ + +  +I  +LG +K+ V + Q  L  S E V A  GL    L LAK  ++
Sbjct:  563 AKWAWLRRGLFYLRVGQHSKSVSDLHAALRADPKDSNCWECLGEAYLSRGGYTTALKSFMKASELNPDSIYSVYKIASIKQILGTYKEAVNEYQQILMKSGEYVPALKGLGECHLMLAKSALS 685          
The following BLAST results are available for this feature:
BLAST of CF835731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TTC37_HUMAN9.749e-1336.07Tetratricopeptide repeat protein 37 OS=Homo sapien... [more]
TTC37_XENLA2.172e-1235.77Tetratricopeptide repeat protein 37 OS=Xenopus lae... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01M13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835731 ID=CF835731; Name=CF835731; organism=Citrus sinensis; type=EST; length=497bp
CTTTATGNGAATTGTTGGAGCATGGAGGAAAGGAGAGCTTGGAAGTTGTC
GTGTGTAGGGAGGCCTCAGACAAGTCTCCAAGGGCTTTCTGGGCATTTCG
TCGCCTGGGTTATCTGCAATTGCATCACAAGAAATGGTCAGAAGCTGTCC
AGAGTCTTCAGCATGCCATACGAGGCTATCCAACCTCTCCTCATCTCTGG
GAAGCTCTTGGTCTTGCTTACCACCGGCTTGGCATGTTTAGTGCTGCTAT
TAAGTCCTATGGGCGAGCCATTGAATTGGATGATACAAGTATCTTTCCTC
TGCTAGAAAGTGGAAACATCTTTTTGATGCTTGGTAATTTCAAAAAGGGA
GTTGAGCAGGTTCAGCTAGCTCTCAAGATTTCATCTGAAAATGTGTCTGC
ACACGATGGGCTTGCTTCAGGCTTGCTTGGATTAGCAAAACAATGCATTA
ATTTGGGTGCATTTATATGGGGAGCTTCACTGCTGGAGGATGCATGC
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