CF835736

Overview
NameCF835736
Unique NameCF835736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835736_ssr185 microsatellite CF835736_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5770 contig Csv1_Contig5770:34..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RBP9X_DROME (Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.241e-19
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  261 VSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYAS 590
            +S + L V Y  V     D   V+   P P    +YYFE+ +   G  G + IG T++ F+M R PGW+  S GYHGDDG  +   G G+ +GPTFTT D +G  +N+ +
Sbjct:  433 LSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCVNFVN 542          
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RBP10_DANRE (Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  252 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGIN 581
            ++ +S + L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N
Sbjct:   53 YIGLSQNNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 162          
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RBP10_MOUSE (Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  252 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGIN 581
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N
Sbjct:   93 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 202          
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RBP10_HUMAN (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  252 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGIN 581
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 174          
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RBP10_BOVIN (Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  252 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGIN 581
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 174          
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RANB9_MOUSE (Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  252 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGIN 581
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N
Sbjct:  102 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 211          
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RANB9_HUMAN (Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  252 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGIN 581
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N
Sbjct:  177 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 286          
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RANB9_DANRE (Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  252 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGIN 581
            ++ +S + L V Y        D   V+A  P P    VYYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N
Sbjct:   59 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 168          
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RANB9_XENLA (Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  252 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGIN 581
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 141          
BLAST of CF835736 vs. ExPASy Swiss-Prot
Match: RANB9_XENTR (Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  252 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGIN 581
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 141          
The following BLAST results are available for this feature:
BLAST of CF835736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RBP9X_DROME1.241e-1939.09Ran-binding proteins 9/10 homolog OS=Drosophila me... [more]
RBP10_DANRE5.215e-1837.27Ran-binding protein 10 OS=Danio rerio GN=ranbp10 P... [more]
RBP10_MOUSE8.896e-1837.27Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 ... [more]
RBP10_HUMAN8.896e-1837.27Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ... [more]
RBP10_BOVIN8.896e-1837.27Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE... [more]
RANB9_MOUSE1.162e-1737.27Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE... [more]
RANB9_HUMAN1.162e-1737.27Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE... [more]
RANB9_DANRE1.162e-1738.18Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=... [more]
RANB9_XENLA1.678e-1635.45Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 ... [more]
RANB9_XENTR2.191e-1635.45Ran-binding protein 9 OS=Xenopus tropicalis GN=ran... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835736 ID=CF835736; Name=CF835736; organism=Citrus sinensis; type=EST; length=596bp
TCGCAAGTCACGTACTCCGAACTCTCCTGCTCATGTATGATTCTTTGAAA
CAAGTGTAGGGTTTCACTTTATGCCAATTCCAAACAATGAGCACAAACAA
CACTAACAACATTAAAAATGAAGATCTCGGCTTGCACTTCCTCGCGCTGG
CCCGGGCTTCTTCGAGCTCGATGGGCGGAAAGCGGGAGGAGGAGGATTTT
GAGGAAGAAGAGGTGCCGACGGAGCTGAACACGATCAACAGCTCTGGAGG
GTTCCTGGTGGTTTCGCCGGATAAGTTGTCGGTCAAGTACACTAGCGTCA
ATCTGCACGGCCATGATGTCGGCGTCGTCCAAGCTAACAAGCCGGCTCCT
GTTAAGCGGCTTGTTTATTACTTTGAGATTTACGTGGAGGACGCTGGTGC
CAAGGGCCAGATTGCCATTGGATTTACCAGTGAGTCTTTCAAGATGCGGA
GGCAACCAGGGTGGGAAGCGAACAGTTGTGGATACCATGGGGATGATGGA
TTGCTTTATCGTGGACAAGGAAAGGGAGAGGCCTTTGGCCCTACGTTTAC
AACTAATGATACTGTTGGTGGTGGTATTAACTATGCTTCACAGGAA
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