CF835740

Overview
NameCF835740
Unique NameCF835740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1126 contig Csv1_Contig1126:318..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835740 vs. ExPASy Swiss-Prot
Match: RL7_CYAP8 (50S ribosomal protein L7/L12 OS=Cyanothece sp. (strain PCC 8801) GN=rplL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = -3
Query:  182 QLAERIASLTPEERRQIFLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAHVEEKKEKTTFDVXXXXXXXXXXXKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVA 559
            Q+ E++ SLT  E  ++   + + F +    P+    + + P G APA +   E ++EKT FDV            I+K V+    LG+KEAK+LVE AP  +K+   K++A +I ++++ AG  A
Sbjct:    7 QILEQLKSLTLLEASELVKQIEEAFGVSAAAPVGGGMMMMAPGGAAPAAA---EPEEEKTEFDVVLEDVPADKKIAILKVVRAITGLGLKEAKDLVESAPKPIKEATNKDDAESIKKQLEEAGAKA 129          
BLAST of CF835740 vs. ExPASy Swiss-Prot
Match: RL7_SYNJB (50S ribosomal protein L7/L12 OS=Synechococcus sp. GN=rplL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = -3
Query:  191 PSDKVVQLAERIASLTPEERRQIFLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAHVEEKKEKTTFDVXXXXXXXXXXXKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAG 577
            PS++V ++ E + +L+  E  ++   + + F +    P     +       A A +A  E  +E+T FDV            I+K V+    LG+K+AK+LVE AP  +K+G+ KEEA++I +K++ AG
Sbjct:    2 PSERVAKILEELKALSLLEASELVKAIEETFGVSAAAPAGGMVMAAPVAAAAAAPAAAPEPVEEQTAFDVILEAVPADKKIAILKVVRELTGLGLKDAKDLVEAAPKPVKEGVAKEEANDIKKKLEEAG 130          
BLAST of CF835740 vs. ExPASy Swiss-Prot
Match: RL7_COPPD (50S ribosomal protein L7/L12 OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=rplL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = -3
Query:  185 VVQLAERIASLTPEERRQIFLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAHVEEKKEKTTFDVXXXXXXXXXXXKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGV 565
            + ++   I +++  +  ++   L ++F +    P++      GP   APA       ++EKT+FDV            ++K V+    LG+KEAK+LVE AP  +K+G+TKEEA  + +K++ AG V
Sbjct:    3 IEEIISEIENMSVSQLAELVKALEEKFGVSASMPVAVAAPVAGPAAAAPA-------EEEKTSFDVILKEAGAKKLE-VIKVVREITGLGLKEAKDLVESAPKPIKEGVTKEEAEELKKKLEEAGAV 121          
BLAST of CF835740 vs. ExPASy Swiss-Prot
Match: RL7_RHIEC (50S ribosomal protein L7/L12 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 41/128 (32.03%), Postives = 71/128 (55.47%), Query Frame = -3
Query:  182 VVQLAERIASLTPEERRQIFLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAHVEEKKEKTTFDVXXXXXXXXXXXKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVA 565
            + ++ E ++SLT  E  ++   L +++ +    P++   +      G  AG A    ++EKT FDV            ++KEV+    LG+KEAK+LVE AP  +K+G++K EA++I +K++ AG  A
Sbjct:    4 LAKIVEDLSSLTVLEAAELSKLLEEKWGVSAAAPVAVAAV------GGAAGGAAAPAEEEKTEFDVILTDAGANKIN-VIKEVRAITGLGLKEAKDLVEGAPKAVKEGVSKAEAADIKKKLEDAGAKA 124          
BLAST of CF835740 vs. ExPASy Swiss-Prot
Match: RL7_CYAA5 (50S ribosomal protein L7/L12 OS=Cyanothece sp. (strain ATCC 51142) GN=rplL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = -3
Query:  191 QLAERIASLTPEERRQIFLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAHVEEKKEKTTFDVXXXXXXXXXXXKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAG 559
            ++ E++ SLT  E  ++   + + F +    P  + G+ +   G A  G+A  E ++EKT FDV            I+K V+    LG+KEAK++VE  P  +K+G  KE+A +I +K++ AG
Sbjct:    7 EILEKLKSLTLLEASELVKQIEEAFGVSAAAP--SGGMMMMAPGAAAPGAAAAEPEEEKTEFDVILEEVPGDKKIAILKVVRGITGLGLKEAKDMVESTPKPIKEGTGKEDAEDIKKKLEEAG 127          
BLAST of CF835740 vs. ExPASy Swiss-Prot
Match: RK12_ODOSI (50S ribosomal protein L12, chloroplastic OS=Odontella sinensis GN=rpl12 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = -3
Query:  173 SDKVVQLAERIASLTPEERRQIFLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAHVEEKKEKTTFDVXXXXXXXXXXXKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME 574
            S+K+ Q+ E + +LT  E  ++   + + F +     +          G   AG A VEE +EKT FDV            ++K V++   LG+KEAKELVE AP  +++G+ K+ A    ++I+ AGG A ++
Sbjct:    2 SEKIDQIVEELKTLTLLEASELVSKIEETFDVDASASVGG--------GMMMAGPAVVEEVEEKTEFDVMLDEVPADKKIAVLKVVRSLTGLGLKEAKELVESAPKQIQEGVAKDAAEEAKKQIEDAGGKASLK 127          
The following BLAST results are available for this feature:
BLAST of CF835740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RL7_CYAP81.396e-1132.5450S ribosomal protein L7/L12 OS=Cyanothece sp. (st... [more]
RL7_SYNJB5.304e-1131.0150S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_COPPD5.304e-1130.7150S ribosomal protein L7/L12 OS=Coprothermobacter ... [more]
RL7_RHIEC6.927e-1132.0350S ribosomal protein L7/L12 OS=Rhizobium etli (st... [more]
RL7_CYAA56.927e-1132.5250S ribosomal protein L7/L12 OS=Cyanothece sp. (st... [more]
RK12_ODOSI6.927e-1132.0950S ribosomal protein L12, chloroplastic OS=Odonte... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01M19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835740 ID=CF835740; Name=CF835740; organism=Citrus sinensis; type=EST; length=633bp
TTTTTTTTTTTTTTTAAACTAATTATTTCCTTCAAAACCCTGCCTTTAAG
AGCTATCCATCTACATAANAAAATTCAGCACCCTTTCTGAGTTCCACCAT
TTTCCAGACAATGAAACCACCTTTTACAGCATAATTAACAATCAATGGTA
CAATCTGATCCAGAGATGTTCATTCCATAATGGCAACTCCCCCAGCAGCT
TTTATCTTCTCTATTATGTTACTCGCCTCCTCTTTGGTTAACCCTTGTTT
AAGGACAACAGGCGCCTTCTCAACCAGCTCTTTGGCTTCCTTCATTCCTA
AATCAAAAAACGTCTTGACTTCTTTAACAATCTTCAGTTTTGCAGCAGCT
TCAAACTTCTCCAATTTAACATCAAAGGTTGTCTTTTCCTTCTTTTCCTC
AACGTGTGCGGATCCAGCAGGGGCACCTCCTTGTGGGCCTAAGTCCAAGC
CTTCTGTTGAAATCGGCTGCAACTTTGGGAGACTAAACCTTTTAAAGAGT
GTGAGAAAAATTTGCCTGCGTTCCTCAGGGGTTAGGGAAGCAATGCGTTC
AGCAAGTTGAACAACTTTATCTGAGGGTGGGGGCCTGGGGCCATATGGAT
CATAGAATGCTGGATATTTGTACTTAATGGGCT
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