CF835749

Overview
NameCF835749
Unique NameCF835749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12881 contig Csv1_Contig12881:890..1616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.805e-50
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYKSQTDPA N D C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKV+LVRAVMYMVAQCLGAI GV LVKAFQ +Y+TRYGGGAN L+DGYS G
Sbjct:   57 TVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIG 167          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.044e-47
Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK Q+D       C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSL+RAV+YMVAQCLGAI GVG VKAFQ SYY RYGGGAN LADGY+TG
Sbjct:   56 TVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTG 166          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.949e-47
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK Q+D   N     C+GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSL+RAV+Y++AQCLGAI GVGLVK FQ SYY RYGGGANEL+DGYS G
Sbjct:   60 TVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANELSDGYSKG 172          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47
Identity = 91/111 (81.98%), Postives = 96/111 (86.49%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK+QTD       C GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARKVSLVR V+Y+VAQCLGAI G G VKAFQ SYYTRYGGGANELADGY+ G
Sbjct:   58 TVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKG 168          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47
Identity = 90/111 (81.08%), Postives = 97/111 (87.39%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK Q+D       C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSL RA++Y++AQCLGAI GVG VKAFQ SYYTRYGGGAN LADGYSTG
Sbjct:   58 TVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTG 168          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.260e-46
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK QTD A +     C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y++AQCLGAI GVGLVK FQ +YY RYGGGANEL+DGYS G
Sbjct:   61 TVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKG 173          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.036e-46
Identity = 89/113 (78.76%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK QTD + +     C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y++AQCLGAI GVGLVK FQ +YY RYGGGANEL+DGYS G
Sbjct:   60 TVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKG 172          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.036e-46
Identity = 89/113 (78.76%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK Q+DP  N     C+GVGILGIAWAFGGMIF+LVYCTAG+SGGHINPAVTFGLFLARKVSLVRAV+Y+VAQ LGAI GVGLVK FQ ++Y RYGGGANEL+DGYS G
Sbjct:   61 TVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKG 173          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.036e-46
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK Q+D       C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSL+RAV+YMVAQCLGAI GVG VKAFQ S+Y  YGGGAN LADGY+TG
Sbjct:   56 TVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANFLADGYNTG 166          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.590e-46
Identity = 90/115 (78.26%), Postives = 99/115 (86.09%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDG----CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK QTD + +  G    C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRA++YMVAQCLGA+ GVGLVKAFQ +Y+ RYGGGAN LA GYS G
Sbjct:   61 TVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGANSLASGYSRG 175          
The following BLAST results are available for this feature:
BLAST of CF835749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PIP25_ARATH9.805e-5084.68Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH2.044e-4781.98Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP22_ORYSJ5.949e-4779.65Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP24_ARATH7.769e-4781.98Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP21_ARATH7.769e-4781.08Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP23_MAIZE2.260e-4679.65Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP24_MAIZE5.036e-4678.76Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_ORYSJ5.036e-4678.76Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP23_ARATH5.036e-4680.18Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP22_MAIZE8.590e-4678.26Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835749 ID=CF835749; Name=CF835749; organism=Citrus sinensis; type=EST; length=727bp
TTTTGATACACAATAGTTTTTATTTATTAATTAAAGAAGACAAAGTACAT
GAACGCAAACAAAGATAATCTCTTGTATAAGAGATTTTTGTAAGTGAACT
GAACTAAATTGACACTCTTATAATTGATAGATAATAACTGTACCCATCTT
TTTATTTAATTATATATATCATCATCCAGATTGCAGACACTTACCCATAA
TAATCAGGATTTCTCCCATATTGAGGAATAACAATAAGATCAAGATTGTC
ATTCCCAACATCATCATCAGCAATACTGGAAGGGGGGAGTAAGTAACCTT
CTGACGGATCGCTCATACCTGCGCCAGGAAGAGTTTTCATATTCTTCAAG
TCAGAAAAGATATTTGCTAGCTTCGAGTGCACTATATTAAAAAATCTGTC
ATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGC
CGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTTG
TCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCA
GTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGT
GATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTTGGGTTGG
TCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAAC
GAGCTGGCCGATGGGTACAGCACCGGC
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