CF835760

Overview
NameCF835760
Unique NameCF835760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7556 contig Csv1_Contig7556:818..1549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835760 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.061e-35
Identity = 76/106 (71.70%), Postives = 90/106 (84.91%), Query Frame = -2
Query:  414 SRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 731
            SRD KGQLTS AGIV  LD LVKEFVAA+ +EKKAVF++IE  V+ LEGS +R+GKIYLKV+K Y++KGSDYAK EI RL+R+L+KSIS AKADE  LKKNILST+
Sbjct:  258 SRDAKGQLTSEAGIVEDLDELVKEFVAANDEEKKAVFARIEEEVKKLEGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTY 363          
BLAST of CF835760 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.928e-34
Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = -2
Query:  414 SRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 731
            SRD KGQLTS AGIV SLDALVKE VAAS DEKKAV S+IE     L+GST R+GK+YLK+AK+Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct:  252 SRDSKGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357          
BLAST of CF835760 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = -2
Query:  414 GQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 716
            G+L   AG V  LD +  EF+AA+ + +K +  K +  V+ L       G  Y+KV K   +K  D+   EI R+ +++  S+S  KADEF  K NIL +F
Sbjct:  260 GKLAVGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESF 360          
The following BLAST results are available for this feature:
BLAST of CF835760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PDIA6_MEDSA1.061e-3571.70Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA6_ARATH9.928e-3469.81Probable protein disulfide-isomerase A6 OS=Arabido... [more]
PDI1_DICDI1.822e-1136.63Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01N09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835760 ID=CF835760; Name=CF835760; organism=Citrus sinensis; type=EST; length=732bp
GGCCCCNCGAGTTTTTTTTTTTTTTTTAATCCCAGTAAGTTTTTAAGTGC
CTCTACATATAAGGCACTTCTAATTATAGTTTTTTTTCCATGTTCCCTAA
TGAAACAAAATAAGTAACTCGGCGGCGACATTAACGTTTAGAAACCAGAA
AGCATCCCAAAATTGTAACTGTGAACGAACGTTTTATCTAAATCATTACA
CTACCTAATTGTACTTCTCTTAACACAAGTTTCATCATATGTGGTCATTT
ATGTCTGAGACCTCAAGATCTTTCCCCGTTAAAAGAAGCTCTGCTCAAAT
AAATTCACAGCAACATCAGATGGCTGTGGTCCATCAATCTCCATAAAGTC
GACTTATAGGTAACCCCAGCCCAATTTGAGATGAATAAAAAAACATAATC
CCACATATTAAGTGAATGTGGATAAAATATTTTTCTTGAGGACGAATTCG
TCCGCTTTTGCCGCGCTGATTGACTTGTCAAGCATACGCTGGAGGCGATC
AATTTCCTTCTTCGCATAATCACTCCCTTTGTCCATATAGTTCTTTGCAA
CTTTCAAGTAAATCTTCCCATGCCTGGCAGTGGAACCCTCAAGCACCTCA
ACTCCCCGTTCAATCTTTGAGAAGACTGCCTTCTTCTCATCACCGCTAGC
AGCAACAAATTCCTTCACCAAGGCATCTAAGCTCGCAACTATACCCGCCG
TTGAAGTAAGTTGTCCTTTTCCATCACGACTG
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